View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18269_high_9 (Length: 473)
Name: NF18269_high_9
Description: NF18269
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18269_high_9 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 264; Significance: 1e-147; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 1 - 457
Target Start/End: Complemental strand, 39901173 - 39900731
Alignment:
| Q |
1 |
tctctcatttccctgcttcataggaagagactatcattcattctctgattatttttactgttctttagcacactcattattatattatattacagtgtta |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39901173 |
tctctcatttccctgcttcataggaagagactatcattcattctctgattatttttactgttctttagcacactcattattatattatattacagtgtta |
39901074 |
T |
|
| Q |
101 |
aataaaatggataacgtatcattagaaaagttacgcagctgctcaaagttaattatatcagttttgctttgtagtaggttaggtggccagacacttccta |
200 |
Q |
| |
|
|||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39901073 |
aataaaatggatgccgtatcattagaaaa------------------gttaattatatcagttttgctttgtagtaggttaggtggccagacacttccta |
39900992 |
T |
|
| Q |
201 |
agctttcgagattcattcaacatgctgatttgaaagaatatcta---nnnnnnnnnnnnngaaagatgaaagaatatctaattaagcagtcacaaattat |
297 |
Q |
| |
|
|||||||||||||||||||||||||| | ||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39900991 |
agctttcgagattcattcaacatgctcaattgaaagaatatctattttttttttttttttgaaagatgaaagaatatctaattaagcagtcacaaattat |
39900892 |
T |
|
| Q |
298 |
ttttaattagtccactacatagatcaccatagtttaatttgatccccgatcacgaactgtgctcactaattgcccattgtaatacaattacataa----n |
393 |
Q |
| |
|
|||||||||||||||||||||||| ||||| |||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
39900891 |
ttttaattagtccactacatagat---catagattaatttgatcctcgatcacgaactgtgctcactaattgcccatagtaatacaattacataattttt |
39900795 |
T |
|
| Q |
394 |
nnnnnngttgagggagagtggtgcattaagggtgtttctttttacatctcgcacatcttatttg |
457 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
39900794 |
ttttttgttgaggaagagtggtgcattaagggtgtttctttttacatctcgcgcatcttatttg |
39900731 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University