View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18269_low_1 (Length: 1086)
Name: NF18269_low_1
Description: NF18269
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18269_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 979; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 979; E-Value: 0
Query Start/End: Original strand, 21 - 1075
Target Start/End: Original strand, 14247288 - 14248347
Alignment:
| Q |
21 |
accgcagaccctgcccccagctctgaaaacagaagcaataatgacagaaactctcgctggaagcataagcaa--cagtcaaaagaccagcagtaggagct |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
14247288 |
accgcagaccctgcccccagctctgaaaacagaagcaataatgacagaaactctcgctggaagcataagcaaaacagtcaaaagaccagcagtaggagct |
14247387 |
T |
|
| Q |
119 |
gacagcacccaccaa---acataaaactcctccatggcacacaccagcaacagcgctgtcaatattcactgaaactcgaggaaaaacctccacttatcgc |
215 |
Q |
| |
|
|||||||||||| | |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
14247388 |
gacagcacccacggacccacataaaactcctccatgacacacaccagcaacagcgctgtcaatattcactgaaactcgaggaaaaacctccacttatcgc |
14247487 |
T |
|
| Q |
216 |
ataaggcattcttttgggttccaacaccattcatagaacaaacacattgccactttagttctatccaacacccacctccaagacagtaccttcacttcct |
315 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14247488 |
ataaggcattcttttgggttccaacaccattcatagaacaaacacgttggcactttagttctatccaacacccacctccaagacagtaccttcacttcct |
14247587 |
T |
|
| Q |
316 |
ccaccaattcatccaccctccttaccacattcttaaagattaagctatttctagcattccaaataacttaaagtgctgcgtgccaaataagccaaagacc |
415 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
14247588 |
ccaccaattcatccaccctccttaccacattcttaaagattaagctatttctagcattccaaataacttaaagtgctgcgtgccaaataagccaaagacc |
14247687 |
T |
|
| Q |
416 |
attccggtgccaaatagcagccttgttcaattgtgagtgtggcgattctatcatcaatgttgtttgtgggaggtatgaacaccttatgggtgagtttact |
515 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
14247688 |
attccggtgccaaatagcagccttgttcaattgtgagtgtggcgattctatcatcaatgttgtttgtgggaggtatgaacaccttatgggtgagtttact |
14247787 |
T |
|
| Q |
516 |
taccaccttgaataggacaattatgatctttccttccttttaaatttgtgaaattgtgtggttcttgttgcaattcgagtcactaatgtcatgtttgttt |
615 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||| |
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|
| T |
14247788 |
taccaccttgaataggacaattatgatctttccttccttttaaatttgtgaaactgtgtggttcttgttgcaattcgagtcactaatgtcatttttgttt |
14247887 |
T |
|
| Q |
616 |
atgggtgtgatagtaagtcttgtgtctcatgtttgcacaacatgaattttctaaagcaccaaacagtagtagtgtgacaatgtgtactgatattgttata |
715 |
Q |
| |
|
|||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
14247888 |
atgggtttgatagtaaatcttgtgtctcatgtttgcacaacatgaattttctaaagcaccaaacagtagtagtgtgacaatgtgtactgatattgttata |
14247987 |
T |
|
| Q |
716 |
tttttagtgctcaatgctgagatgagtcttgtggctgggtaggtaggttcacgtcctgtactaagtgttgcaccccatttgctctgataggctccaaaat |
815 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
14247988 |
tttttagtgctcaatgctgagatgagtcttgtggctggggaggtaggttcacgtcctgtactaagtgttgcgccccatttgctctgataggctccaaaat |
14248087 |
T |
|
| Q |
816 |
gacctttccaaggtcaacgcccttattgggatggagcaagatgaagtctaagataggaactcaacatgcttagcagtcatgagcaaatggttgagtaact |
915 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
14248088 |
gacctttccaaggtcaacgcccttattgggatggagcaagatgaagtctaagataggaactcaacatgcttagcagtcatgagcaaatggttgagtaact |
14248187 |
T |
|
| Q |
916 |
ttcaacccttcgtcccaaattctatgttattaagactactttctaagacgtccaattgtttgaattagctagctaggaaaattttgttcgattgtgacga |
1015 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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|
| T |
14248188 |
ttcaacccttcgtcccaaattctatgttattaagactactttctaagacgtccaattgtttgaattagctagctaggaaaattttgttcgatggtgacga |
14248287 |
T |
|
| Q |
1016 |
tgagtgcacaaagccaataatattcaattcagtagaatttactcaatgtcttttgatgat |
1075 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
14248288 |
tgagtgcacaaagccaagaatattcaattcagtagaatttactcaatgtcttttgttgat |
14248347 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 101; E-Value: 2e-49
Query Start/End: Original strand, 105 - 252
Target Start/End: Original strand, 9850274 - 9850424
Alignment:
| Q |
105 |
cagcagtaggagctgacagcacccaccaa---acataaaactcctccatggcacacaccagcaacagcgctgtcaatattcactgaaactcgaggaaaaa |
201 |
Q |
| |
|
||||||||||||||||||||||||||||| ||| |||||||||||| |||| | |||||| |||||| |||||||||||||||||||||||||||| |
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|
| T |
9850274 |
cagcagtaggagctgacagcacccaccaacccacagaaaactcctccacggcatgtaacagcaatagcgctatcaatattcactgaaactcgaggaaaaa |
9850373 |
T |
|
| Q |
202 |
cctccacttatcgcataaggcattcttttgggttccaacaccattcataga |
252 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9850374 |
actccacttatcgcataaggcattcttttgggttccaacaccattcataga |
9850424 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 294 - 426
Target Start/End: Original strand, 9850591 - 9850723
Alignment:
| Q |
294 |
caagacagtaccttcacttcctccaccaattcatccaccctccttaccacattcttaaagattaagctatttctagcattccaaataacttaaagtgctg |
393 |
Q |
| |
|
|||||||||||||||||||||||| ||||||| ||||||||| ||||||||||| |||||||||||||||| |||| |||||||||||| ||||||| | |
|
|
| T |
9850591 |
caagacagtaccttcacttcctccgccaattcctccaccctctttaccacattcataaagattaagctattcctagaattccaaataacccaaagtgccg |
9850690 |
T |
|
| Q |
394 |
cgtgccaaataagccaaagaccattccggtgcc |
426 |
Q |
| |
|
|||||||||||||||||||||||||| ||||| |
|
|
| T |
9850691 |
tgtgccaaataagccaaagaccattccagtgcc |
9850723 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 829 - 878
Target Start/End: Original strand, 14263349 - 14263398
Alignment:
| Q |
829 |
tcaacgcccttattgggatggagcaagatgaagtctaagataggaactca |
878 |
Q |
| |
|
|||||| ||| ||||||||||||||| ||||||||||| |||||||||| |
|
|
| T |
14263349 |
tcaacgacctaattgggatggagcaacatgaagtctaaactaggaactca |
14263398 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 213; Significance: 1e-116; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 21 - 425
Target Start/End: Original strand, 1330074 - 1330480
Alignment:
| Q |
21 |
accgcagaccctgcccccagctctgaaaacagaagcaa-taatgacagaaactctcgctggaagcataagcaa--cagtcaaaaga--ccagcagtagga |
115 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||| |||| |||| ||||||| || ||||||||||||| |||| |||| | |||||||||||| |
|
|
| T |
1330074 |
accgcagaccctacccccagctctgaaaacagaagcaactaataacagcaactctccctagaagcataagcaaaacagtaaaaaaaaaccagcagtagga |
1330173 |
T |
|
| Q |
116 |
gctgacagcacccaccaa---acataaaactcctccatggcacacaccagcaacagcgctgtcaatattcactgaaactcgaggaaaaacctccacttat |
212 |
Q |
| |
|
||||| |||||||||| | ||| ||| |||||||| | |||||||||||||||||||||||||||| ||| |||||||||| |||||| |||| |||| |
|
|
| T |
1330174 |
gctgaaagcacccaccgacccacaaaaatctcctccacgacacacaccagcaacagcgctgtcaatatacacagaaactcgagaaaaaac-tccaattat |
1330272 |
T |
|
| Q |
213 |
cgcataaggcattcttttgggttccaacaccattcatagaacaaacacattgccactttagttctatccaacacccacctccaagacagtaccttcactt |
312 |
Q |
| |
|
| |||||||| |||||||||||||||||||||||||||| ||||| | |||||||||||||||||||||||| ||||||||| |||||||| |
|
|
| T |
1330273 |
caggtaaggcatccttttgggttccaacaccattcatagaataaacatgccgacactttagttctatccaacacccaactccaagac-----cttcactt |
1330367 |
T |
|
| Q |
313 |
cctccaccaattcatccaccctccttaccacattcttaaagattaagctatttctagcattccaaataacttaaagtgctgcgtgccaaataagccaaag |
412 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||| |||| |
|
|
| T |
1330368 |
cctccaccaattcatccaccctccttaccacattcttaaagattaagctatttctagcattccaaataacccaaagtgccgcgtgccaaataagcaaaag |
1330467 |
T |
|
| Q |
413 |
accattccggtgc |
425 |
Q |
| |
|
||||||||||||| |
|
|
| T |
1330468 |
accattccggtgc |
1330480 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 210 - 256
Target Start/End: Complemental strand, 29083237 - 29083191
Alignment:
| Q |
210 |
tatcgcataaggcattcttttgggttccaacaccattcatagaacaa |
256 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
29083237 |
tatcgcaaaaggcattcttttgggttccaacaccattcataaaacaa |
29083191 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 225 - 259
Target Start/End: Complemental strand, 41029722 - 41029688
Alignment:
| Q |
225 |
tcttttgggttccaacaccattcatagaacaaaca |
259 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||| |
|
|
| T |
41029722 |
tcttttgggttccaacaccattcataaaacaaaca |
41029688 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 218 - 256
Target Start/End: Complemental strand, 48721891 - 48721853
Alignment:
| Q |
218 |
aaggcattcttttgggttccaacaccattcatagaacaa |
256 |
Q |
| |
|
|||||||||||| || ||||||||||||||||||||||| |
|
|
| T |
48721891 |
aaggcattctttcggattccaacaccattcatagaacaa |
48721853 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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