View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18269_low_10 (Length: 442)
Name: NF18269_low_10
Description: NF18269
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18269_low_10 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 348; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 15 - 428
Target Start/End: Complemental strand, 5243349 - 5242939
Alignment:
| Q |
15 |
agctagcacataagaggtgatgatgatggatcacttgttctggctcctnnnnnnnnnnnnnnnnnnngtcttgaacttggactcatcaatatcaatacct |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
5243349 |
agctagcacataagaggtgatgatgatggatcacttgttctggctcctaccaccaccaccacca---gtcttgaacttggactcatcaatatcaatacct |
5243253 |
T |
|
| Q |
115 |
tcctcttcagcacgttctcctcctgacttctccatagtgctcagtcctcctttacgtcccatctcctgatacccttctgtccctagttgctccttccttg |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5243252 |
tcctcttcagcacgttctcctcctgacttctccatagtgctcagtcctcctttacgtcccatctcctgatacccttctgtccctagttgctccttccttg |
5243153 |
T |
|
| Q |
215 |
tctgccctcccttgctccttcctttaattaaacatcaaaaattagtatcaaattttaagtatataataatatgcattaatcataaactaatgtataacct |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5243152 |
tctgccctcccttgctccttcctttaattaaacaccaaaaattagtatcaaattttaagtatataataatatgcattaatcataaactaatgtataacct |
5243053 |
T |
|
| Q |
315 |
tcagcaagatgttcctgagcctcaaggctcttgccaccagtgccaccaggaacaacagtctctccttgctttgccttctcctcaagctcttgtcggtttt |
414 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5243052 |
tcagcaagatgttcctgagcctcaaggctcttgccaccagtgccaccaggaacaacagtctctccttgctttgccttctcctcaagctcttgtcggtttt |
5242953 |
T |
|
| Q |
415 |
gttgtttagatgcc |
428 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
5242952 |
gttgtttagatgcc |
5242939 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 53; Significance: 3e-21; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 88 - 224
Target Start/End: Original strand, 25522985 - 25523121
Alignment:
| Q |
88 |
aacttggactcatcaatatcaataccttcctcttcagcacgttctcctcctgacttctccatagtgctcagtcctcctttacgtcccatctcctgatacc |
187 |
Q |
| |
|
|||||||| |||||||| || || |||||||| ||||||||| | | || ||||| |||||||| || |||||||||||||| ||||| || ||||||| |
|
|
| T |
25522985 |
aacttggattcatcaatgtctattccttcctcagcagcacgttgttcaccagacttatccatagtactgagtcctcctttacggcccatttcttgatacc |
25523084 |
T |
|
| Q |
188 |
cttctgtccctagttgctccttccttgtctgccctcc |
224 |
Q |
| |
|
||||| |||| | ||||| ||||||||||||||||| |
|
|
| T |
25523085 |
cttctctccccatctgctctttccttgtctgccctcc |
25523121 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 312 - 420
Target Start/End: Original strand, 25523273 - 25523381
Alignment:
| Q |
312 |
ccttcagcaagatgttcctgagcctcaaggctcttgccaccagtgccaccaggaacaacagtctctccttgctttgccttctcctcaagctcttgtcggt |
411 |
Q |
| |
|
||||||||||| |||| ||||| ||||| ||||| ||||| ||||||||||||| |||||| || || || ||||| |||||||||| |||| |||| |
|
|
| T |
25523273 |
ccttcagcaaggtgttgttgagcttcaagactctttccacctgtgccaccaggaataacagtttcaccaagccttgccctctcctcaagttcttcacggt |
25523372 |
T |
|
| Q |
412 |
tttgttgtt |
420 |
Q |
| |
|
||||||||| |
|
|
| T |
25523373 |
tttgttgtt |
25523381 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 171 - 224
Target Start/End: Original strand, 25523128 - 25523181
Alignment:
| Q |
171 |
tcccatctcctgatacccttctgtccctagttgctccttccttgtctgccctcc |
224 |
Q |
| |
|
||||||||| ||||| ||||||| ||||| |||| |||||||||||||||||| |
|
|
| T |
25523128 |
tcccatctcttgatatccttctgaccctaactgctgcttccttgtctgccctcc |
25523181 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 366 - 428
Target Start/End: Original strand, 2954053 - 2954115
Alignment:
| Q |
366 |
acaacagtctctccttgctttgccttctcctcaagctcttgtcggttttgttgtttagatgcc |
428 |
Q |
| |
|
||||||| |||||| | ||||||||| |||||||||||||||| |||||||||| ||||||| |
|
|
| T |
2954053 |
acaacaggctctccctcctttgccttttcctcaagctcttgtcacttttgttgttgagatgcc |
2954115 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University