View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18269_low_11 (Length: 431)
Name: NF18269_low_11
Description: NF18269
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18269_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 361; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 20 - 416
Target Start/End: Complemental strand, 6729773 - 6729377
Alignment:
| Q |
20 |
actgccaccaacaaccgcctcactgaagaactccaaagccttcattccaaaattgatagccaacgcctccatttcgaccaacaacttcaggaccgcgagg |
119 |
Q |
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| T |
6729773 |
actgccaccaacaaccgcctcactgaagaactccaaacccttcattccaaaattgacagccaacgcctccatttcgaccaacaacttcaggaccgcgagg |
6729674 |
T |
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| Q |
120 |
aacatcttaatcgcacgatggccacaaaccaagacgagctcaggtcattcatagtcgccgccctccagcagagagaaccatctacctcccagatcttgcc |
219 |
Q |
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||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6729673 |
aacgtcttaaccgcacgatggccacaaaccaagacgagctcaggtcattcatagtcgccgccctccagcagagagaaccatctacctcccagatcttgcc |
6729574 |
T |
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| Q |
220 |
tcctcctacgagccacacaacaggtaacaccacacttactttcacagaacctgtgcttgaaccagtccttactcctatatccaacaccacactacctcta |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
6729573 |
tcctcctacgagccacacaacaggtaacaccacacttactttcacagaacctgtgcttgaaccaatccttactcctatatccaacaccacactacctcta |
6729474 |
T |
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| Q |
320 |
acccacacaaactcatcacctttcactggatctgcaacaaccccattctctacctcaacaaattttattcctttctctacactgttatcacttcatc |
416 |
Q |
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|||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| |
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| T |
6729473 |
acccacacaaactcatcacccttcactagatctgcaacaaccccattctctacctcaacaaattttattcttttctctacaccgttatcacttcatc |
6729377 |
T |
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