View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18269_low_13 (Length: 394)
Name: NF18269_low_13
Description: NF18269
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18269_low_13 |
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| [»] scaffold0036 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 160; Significance: 4e-85; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 160; E-Value: 4e-85
Query Start/End: Original strand, 97 - 376
Target Start/End: Complemental strand, 3083289 - 3083011
Alignment:
| Q |
97 |
gtagccattgttttctcaaagaaaatgcagtcaaatagctacttaaaatcgtgaggtaagcaacctttaatgctcaaaccaagtgaaagttcctcatgca |
196 |
Q |
| |
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||||||||||||| |||| ||| |||||||| ||||||||||| ||||| ||||||||| |||||||||| |||||||||| |||||||||||| |||| |
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| T |
3083289 |
gtagccattgtttgctcagagagaatgcagttaaatagctactataaatc-tgaggtaagtaacctttaattctcaaaccaaatgaaagttcctcttgca |
3083191 |
T |
|
| Q |
197 |
taagatgtagttattccaattaaggcttgtgcacatgtatgttaactccaatagcagtctcctcattctcagtccctaaatgaataaagcagtacaccag |
296 |
Q |
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|||||||||| | |||||||||| | |||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||| |||||| |
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| T |
3083190 |
taagatgtagctgttccaattaaagtttgtgcacatgtatgttaactccaatagcagtttcctcattctccacccctaaatgaataaagcagaacaccaa |
3083091 |
T |
|
| Q |
297 |
aaattggacatccttgtaagtaacaaacctgctgccttacataccaaaagcaaattcacaaaaaacacacatgatagggg |
376 |
Q |
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||||||||||||||||||||||||||||| ||||||||||| |||| ||||||||| ||||||| ||| |||| ||||| |
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| T |
3083090 |
aaattggacatccttgtaagtaacaaaccagctgccttacaaaccagaagcaaattagcaaaaaatacatatgacagggg |
3083011 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 97 - 376
Target Start/End: Complemental strand, 38404072 - 38403806
Alignment:
| Q |
97 |
gtagccattgttttctcaaagaaaatgcagtcaaatagctacttaaaatcgtgaggtaagcaacctttaatgctcaaaccaagtgaaagttcctcatgca |
196 |
Q |
| |
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||||||||||||| |||| ||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||| | |||||||||| || | |
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| T |
38404072 |
gtagccattgtttgctcagagagaatgcagtcaaatagctacttaaaatcctgaggtaagcaacctttaatgctcaacctaagtgaaagtagctgcaact |
38403973 |
T |
|
| Q |
197 |
taagatgtagttattccaattaaggcttgtgcacatgtatgttaactccaatagcagtctcctcattctcagtccctaaatgaataaagcagtacaccag |
296 |
Q |
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||||||||||||||| ||||||| | ||||| ||||||||||| ||||||||||||||||||| |||||||||||||||||| ||||| |
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| T |
38403972 |
taagatgtagttattacaattaaagtttgtg----------ttaactccaatggcagtctcctcattctcagcccctaaatgaataaagca---caccaa |
38403886 |
T |
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| Q |
297 |
aaattggacatccttgtaagtaacaaacctgctgccttacataccaaaagcaaattcacaaaaaacacacatgatagggg |
376 |
Q |
| |
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|||||||||||| |||||||||| ||||||||||||||||| |||| |||||||||| ||||||||||||| || ||||| |
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| T |
38403885 |
aaattggacatcattgtaagtaataaacctgctgccttacaaaccagaagcaaattcgcaaaaaacacacaggacagggg |
38403806 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 10 - 91
Target Start/End: Complemental strand, 38404220 - 38404139
Alignment:
| Q |
10 |
aagaaaatcaataacaataattacttttcaatttcaatcaattcaaacaaagtaagaaacacaaaaattatcacgttaattt |
91 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||| ||||||| ||| |||||||| |
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| T |
38404220 |
aagaaaatcaataacaataatcacttttcaatttcaatcaattcaaacaaagaaagaaacaaaaaaattctcaagttaattt |
38404139 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 141; Significance: 8e-74; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 141; E-Value: 8e-74
Query Start/End: Original strand, 97 - 325
Target Start/End: Complemental strand, 40910038 - 40909811
Alignment:
| Q |
97 |
gtagccattgttttctcaaagaaaatgcagtcaaatagctacttaaaatcgtgaggtaagcaacctttaatgctcaaaccaagtgaaagttcctcatgca |
196 |
Q |
| |
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||||||||||||| |||| ||| |||||||| ||||||||||| ||||| ||||||||| |||||||||| |||||||||| |||||||||||| |||| |
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| T |
40910038 |
gtagccattgtttgctcagagagaatgcagttaaatagctactataaatc-tgaggtaagtaacctttaattctcaaaccaaatgaaagttcctcttgca |
40909940 |
T |
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| Q |
197 |
taagatgtagttattccaattaaggcttgtgcacatgtatgttaactccaatagcagtctcctcattctcagtccctaaatgaataaagcagtacaccag |
296 |
Q |
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|||||||||| | |||||||||| | |||||||||||||||||||||||||||||||| |||| |||||| | ||||||||||||||||||| |||||| |
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| T |
40909939 |
taagatgtagctgttccaattaaagtttgtgcacatgtatgttaactccaatagcagtttccttattctccgcccctaaatgaataaagcagaacaccaa |
40909840 |
T |
|
| Q |
297 |
aaattggacatccttgtaagtaacaaacc |
325 |
Q |
| |
|
||||||||||||||||||||||||||||| |
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| T |
40909839 |
aaattggacatccttgtaagtaacaaacc |
40909811 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 274 - 363
Target Start/End: Complemental strand, 33814092 - 33814003
Alignment:
| Q |
274 |
aaatgaataaagcagtacaccagaaattggacatccttgtaagtaacaaacctgctgccttacataccaaaagcaaattcacaaaaaaca |
363 |
Q |
| |
|
||||||||||||||| |||||| |||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| |
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| T |
33814092 |
aaatgaataaagcagcacaccaaaaattgaacatccttgtaagtaacaaacctgctgccttacataccagaagcaaattcaaaaaaaaca |
33814003 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 10 - 91
Target Start/End: Complemental strand, 33814194 - 33814113
Alignment:
| Q |
10 |
aagaaaatcaataacaataattacttttcaatttcaatcaattcaaacaaagtaagaaacacaaaaattatcacgttaattt |
91 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| |
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| T |
33814194 |
aagaaaatcaataacaataatcacttttcaatttcaatcaattcaaacaaaggaagaaacacaaaaattatcaagttaattt |
33814113 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 274 - 363
Target Start/End: Complemental strand, 33873562 - 33873473
Alignment:
| Q |
274 |
aaatgaataaagcagtacaccagaaattggacatccttgtaagtaacaaacctgctgccttacataccaaaagcaaattcacaaaaaaca |
363 |
Q |
| |
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||||||||||||||| |||||| |||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| |
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| T |
33873562 |
aaatgaataaagcagcacaccaaaaattgaacatccttgtaagtaacaaacctgctgccttacataccagaagcaaattcaaaaaaaaca |
33873473 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 10 - 91
Target Start/End: Complemental strand, 33873664 - 33873583
Alignment:
| Q |
10 |
aagaaaatcaataacaataattacttttcaatttcaatcaattcaaacaaagtaagaaacacaaaaattatcacgttaattt |
91 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| |
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|
| T |
33873664 |
aagaaaatcaataacaataatcacttttcaatttcaatcaattcaaacaaaggaagaaacacaaaaattatcaagttaattt |
33873583 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0036 (Bit Score: 131; Significance: 7e-68; HSPs: 2)
Name: scaffold0036
Description:
Target: scaffold0036; HSP #1
Raw Score: 131; E-Value: 7e-68
Query Start/End: Original strand, 97 - 376
Target Start/End: Complemental strand, 99662 - 99396
Alignment:
| Q |
97 |
gtagccattgttttctcaaagaaaatgcagtcaaatagctacttaaaatcgtgaggtaagcaacctttaatgctcaaaccaagtgaaagttcctcatgca |
196 |
Q |
| |
|
||||||||||||| |||| ||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||| | |||||||||| || | |
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| T |
99662 |
gtagccattgtttgctcagagagaatgcagtcaaatagctacttaaaatcctgaggtaagcaacctttaatgctcaacctaagtgaaagtagctgcaact |
99563 |
T |
|
| Q |
197 |
taagatgtagttattccaattaaggcttgtgcacatgtatgttaactccaatagcagtctcctcattctcagtccctaaatgaataaagcagtacaccag |
296 |
Q |
| |
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||||||||||||||| ||||||| | ||||| ||||||||||| ||||||||||||||||||| |||||||||||||||||| ||||| |
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| T |
99562 |
taagatgtagttattacaattaaagtttgtg----------ttaactccaatggcagtctcctcattctcagcccctaaatgaataaagca---caccaa |
99476 |
T |
|
| Q |
297 |
aaattggacatccttgtaagtaacaaacctgctgccttacataccaaaagcaaattcacaaaaaacacacatgatagggg |
376 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||| |||| |||||||||| ||||||||||||| || ||||| |
|
|
| T |
99475 |
aaattggacatccttgtaagtaataaacctgctgccttacaaaccagaagcaaattcgcaaaaaacacacaggacagggg |
99396 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0036; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 10 - 91
Target Start/End: Complemental strand, 99810 - 99729
Alignment:
| Q |
10 |
aagaaaatcaataacaataattacttttcaatttcaatcaattcaaacaaagtaagaaacacaaaaattatcacgttaattt |
91 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||| ||||||| ||| |||||||| |
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|
| T |
99810 |
aagaaaatcaataacaataatcacttttcaatttcaatcaattcaaacaaagaaagaaacaaaaaaattctcaagttaattt |
99729 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 97 - 145
Target Start/End: Original strand, 24469255 - 24469303
Alignment:
| Q |
97 |
gtagccattgttttctcaaagaaaatgcagtcaaatagctacttaaaat |
145 |
Q |
| |
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||||||||||||| |||| ||| |||| |||||||||||||||||||| |
|
|
| T |
24469255 |
gtagccattgtttgctcagagagaatgtggtcaaatagctacttaaaat |
24469303 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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