View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18269_low_15 (Length: 301)

Name: NF18269_low_15
Description: NF18269
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18269_low_15
NF18269_low_15
[»] chr8 (5 HSPs)
chr8 (17-290)||(14753809-14754082)
chr8 (18-128)||(3043262-3043372)
chr8 (16-59)||(9197113-9197156)
chr8 (18-48)||(17724785-17724815)
chr8 (13-46)||(3165126-3165159)
[»] chr3 (9 HSPs)
chr3 (13-291)||(51469039-51469317)
chr3 (16-128)||(13477075-13477187)
chr3 (34-128)||(28592685-28592779)
chr3 (18-149)||(43201934-43202066)
chr3 (13-69)||(11652308-11652365)
chr3 (16-52)||(10847908-10847944)
chr3 (16-59)||(20212998-20213041)
chr3 (16-55)||(48649169-48649208)
chr3 (17-46)||(31115604-31115633)
[»] scaffold0022 (1 HSPs)
scaffold0022 (20-147)||(148396-148523)
[»] chr5 (3 HSPs)
chr5 (18-147)||(33470400-33470529)
chr5 (13-45)||(14478935-14478967)
chr5 (14-46)||(22798916-22798948)
[»] chr7 (2 HSPs)
chr7 (14-161)||(48717308-48717456)
chr7 (20-48)||(3689274-3689302)
[»] chr4 (4 HSPs)
chr4 (16-147)||(12919603-12919734)
chr4 (13-46)||(53148616-53148649)
chr4 (16-55)||(24158816-24158855)
chr4 (13-46)||(53773591-53773624)
[»] chr1 (8 HSPs)
chr1 (32-149)||(25084541-25084658)
chr1 (13-46)||(4135549-4135582)
chr1 (13-46)||(7407008-7407041)
chr1 (13-46)||(8987804-8987837)
chr1 (16-49)||(19172577-19172610)
chr1 (13-49)||(19171792-19171828)
chr1 (16-64)||(25469073-25469121)
chr1 (13-45)||(37853141-37853173)
[»] chr6 (1 HSPs)
chr6 (13-45)||(505551-505583)
[»] chr2 (5 HSPs)
chr2 (13-49)||(18820447-18820483)
chr2 (16-47)||(8669199-8669230)
chr2 (13-46)||(22560572-22560605)
chr2 (16-49)||(40252040-40252073)
chr2 (18-46)||(22559878-22559906)


Alignment Details
Target: chr8 (Bit Score: 234; Significance: 1e-129; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 17 - 290
Target Start/End: Complemental strand, 14754082 - 14753809
Alignment:
Q  17 aggtgtcaacagattcgttgacaccaaatcctagccgttctttgttttaatcttaatggctcacatttattcaccaacttgttcccgtggagactcttca 116  Q
    |||||||||| |||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| || |||||| ||||| |||||||||    
T  14754082 aggtgtcaacggatttgttgacactaaatcctagccgttctttgttttaatcttaatggctcacatttattcacgaatttgttcacgtggggactcttca 14753983  T
Q  117 aagaaaaacatactgccctctcatcttcttcttgaaggcactcattcttatggttattggagacaaattttaatgacaattgctctcgtgttttcgattt 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  14753982 aagaaaaacatactgccctctcatcttcttcttgaaggcactcattcttatggttattggagacaaattttaatgacaattgctctcatgttttcgattt 14753883  T
Q  217 cattctcggtcacaatactgttaaaaattgttgttttcgttcccatcaaaattacttctctcttttcttttcat 290  Q
    |||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  14753882 cattctcggtcacaatactgttgaaaattgttgctttcgttcccatcaaaattacttctctcttttcttttcat 14753809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 18 - 128
Target Start/End: Original strand, 3043262 - 3043372
Alignment:
Q  18 ggtgtcaacagattcgttgacaccaaatcctagccgttctttgttttaatcttaatggctcacatttattcaccaacttgttcccgtggagactcttcaa 117  Q
    |||||||||| |||| |||||||||||||||| || |||||| |||| ||||||||||||| |||||||||||  | |||||   |||| ||||||||||    
T  3043262 ggtgtcaacaaattcattgacaccaaatcctaaccattctttattttgatcttaatggctcccatttattcacttaattgttaatgtggggactcttcaa 3043361  T
Q  118 agaaaaacata 128  Q
    |||||||||||    
T  3043362 agaaaaacata 3043372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 16 - 59
Target Start/End: Original strand, 9197113 - 9197156
Alignment:
Q  16 caggtgtcaacagattcgttgacaccaaatcctagccgttcttt 59  Q
    |||||||||||  ||||||||||||||||||||| |||||||||    
T  9197113 caggtgtcaacgaattcgttgacaccaaatcctatccgttcttt 9197156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 48
Target Start/End: Original strand, 17724785 - 17724815
Alignment:
Q  18 ggtgtcaacagattcgttgacaccaaatcct 48  Q
    |||||||||||||||||||||||||||||||    
T  17724785 ggtgtcaacagattcgttgacaccaaatcct 17724815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 46
Target Start/End: Complemental strand, 3165159 - 3165126
Alignment:
Q  13 catcaggtgtcaacagattcgttgacaccaaatc 46  Q
    |||||||||||||| |||||||||||||||||||    
T  3165159 catcaggtgtcaacggattcgttgacaccaaatc 3165126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 203; Significance: 1e-111; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 13 - 291
Target Start/End: Complemental strand, 51469317 - 51469039
Alignment:
Q  13 catcaggtgtcaacagattcgttgacaccaaatcctagccgttctttgttttaatcttaatggctcacatttattcaccaacttgttcccgtggagactc 112  Q
    ||||| |||||||| ||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| | ||||||||| |||||  ||||    
T  51469317 catcaagtgtcaacggattcgttgacaccaaatcttagccattctttgttttaatcttaatggctcacatttattcgcgaacttgttcacgtgggaactc 51469218  T
Q  113 ttcaaagaaaaacatactgccctctcatcttcttcttgaaggcactcattcttatggttattggagacaaattttaatgacaattgctctcgtgttttcg 212  Q
    |||||||||||| ||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||| ||||||||||||  ||||||||    
T  51469217 ttcaaagaaaaatatactaccctctcatcttcttcttgaaggcactcattcatatggttattggagacaaattctaaagacaattgctctaatgttttcg 51469118  T
Q  213 atttcattctcggtcacaatactgttaaaaattgttgttttcgttcccatcaaaattacttctctcttttcttttcatc 291  Q
    |||||||||||||||||| |||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||    
T  51469117 atttcattctcggtcacagtactgttaaaaattgttgctttcattcccatcaaaattacttctctcttttcttttcatc 51469039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 16 - 128
Target Start/End: Original strand, 13477075 - 13477187
Alignment:
Q  16 caggtgtcaacagattcgttgacaccaaatcctagccgttctttgttttaatcttaatggctcacatttattcaccaacttgttcccgtggagactcttc 115  Q
    |||||||||||  |||| |||||||||||||||| || |||||| |||| ||||||||||||| |||||||||||  | |||||   |||| ||||||||    
T  13477075 caggtgtcaacgaattcattgacaccaaatcctaaccattctttattttgatcttaatggctcccatttattcacttaattgttaatgtggggactcttc 13477174  T
Q  116 aaagaaaaacata 128  Q
    |||||||||||||    
T  13477175 aaagaaaaacata 13477187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 34 - 128
Target Start/End: Complemental strand, 28592779 - 28592685
Alignment:
Q  34 ttgacaccaaatcctagccgttctttgttttaatcttaatggctcacatttattcaccaacttgttcccgtggagactcttcaaagaaaaacata 128  Q
    ||||||||||||| || ||||  ||| |||||||||||||||||| |||||||||| | | |||||| ||||| |||||||||||||||| ||||    
T  28592779 ttgacaccaaatcataaccgtcatttattttaatcttaatggctctcatttattcagctaattgttcacgtggggactcttcaaagaaaagcata 28592685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 18 - 149
Target Start/End: Original strand, 43201934 - 43202066
Alignment:
Q  18 ggtgtcaacagattcgttgacaccaaatcctagccgttctttgttttaatcttaatggctcacatttattcaccaacttgttcccgtggagactcttcaa 117  Q
    ||||||||  |||| |||||||||||||| ||||||| |||| |||||| |||| || ||| |||||||||| | | |||||   |||  ||||||||||    
T  43201934 ggtgtcaatggatttgttgacaccaaatcatagccgtcctttattttaaacttagtgactctcatttattcagctaattgtttatgtgaggactcttcaa 43202033  T
Q  118 agaaaaacatactgc-cctctcatcttcttctt 149  Q
    |||||||||||  ||  ||||||||||||||||    
T  43202034 agaaaaacatatcgctgctctcatcttcttctt 43202066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 13 - 69
Target Start/End: Original strand, 11652308 - 11652365
Alignment:
Q  13 catcaggtgtcaacagattcgttgacaccaaatcctagccgttc-tttgttttaatct 69  Q
    |||||||||||||| ||||||||||||||||||||||  ||||| ||| |||||||||    
T  11652308 catcaggtgtcaacggattcgttgacaccaaatcctaagcgttcatttcttttaatct 11652365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 52
Target Start/End: Complemental strand, 10847944 - 10847908
Alignment:
Q  16 caggtgtcaacagattcgttgacaccaaatcctagcc 52  Q
    ||||||||||||||||| |||||||||||||||||||    
T  10847944 caggtgtcaacagattcattgacaccaaatcctagcc 10847908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 16 - 59
Target Start/End: Original strand, 20212998 - 20213041
Alignment:
Q  16 caggtgtcaacagattcgttgacaccaaatcctagccgttcttt 59  Q
    |||||||||||  ||||||||||||||||||||| |||||||||    
T  20212998 caggtgtcaacgaattcgttgacaccaaatcctatccgttcttt 20213041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 16 - 55
Target Start/End: Complemental strand, 48649208 - 48649169
Alignment:
Q  16 caggtgtcaacagattcgttgacaccaaatcctagccgtt 55  Q
    ||||||||||||||||||||||||||||||| || |||||    
T  48649208 caggtgtcaacagattcgttgacaccaaatcttaaccgtt 48649169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 46
Target Start/End: Complemental strand, 31115633 - 31115604
Alignment:
Q  17 aggtgtcaacagattcgttgacaccaaatc 46  Q
    ||||||||||||||||||||||||||||||    
T  31115633 aggtgtcaacagattcgttgacaccaaatc 31115604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 20 - 147
Target Start/End: Original strand, 148396 - 148523
Alignment:
Q  20 tgtcaacagattcgttgacaccaaatcctagccgttctttgttttaatcttaatggctcacatttattcaccaacttgttcccgtggagactcttcaaag 119  Q
    |||||||  |||||||||| | |||||||| || ||||||||||| |||||||||||||||||||||||||    ||||||  |||| ||||||||||||    
T  148396 tgtcaacgaattcgttgactctaaatcctaaccattctttgttttgatcttaatggctcacatttattcacttgattgttcaggtggggactcttcaaag 148495  T
Q  120 aaaaacatactgccctctcatcttcttc 147  Q
    |||||||||   | ||||||||||||||    
T  148496 aaaaacatatcacactctcatcttcttc 148523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 54; Significance: 5e-22; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 18 - 147
Target Start/End: Original strand, 33470400 - 33470529
Alignment:
Q  18 ggtgtcaacagattcgttgacaccaaatcctagccgttctttgttttaatcttaatggctcacatttattcaccaacttgttcccgtggagactcttcaa 117  Q
    |||||||||  ||| ||||||||||||||| | || |||||| |||| ||||||||||||| |||||||||||  | |||||  | ||||||||||| ||    
T  33470400 ggtgtcaacgaatttgttgacaccaaatccaaaccattctttattttgatcttaatggctcccatttattcacttaattgttaacatggagactctttaa 33470499  T
Q  118 agaaaaacatactgccctctcatcttcttc 147  Q
    ||||||||||| | | ||||||||||||||    
T  33470500 agaaaaacatattacactctcatcttcttc 33470529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 13 - 45
Target Start/End: Original strand, 14478935 - 14478967
Alignment:
Q  13 catcaggtgtcaacagattcgttgacaccaaat 45  Q
    |||||||||||||| ||||||||||||||||||    
T  14478935 catcaggtgtcaacggattcgttgacaccaaat 14478967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 14 - 46
Target Start/End: Original strand, 22798916 - 22798948
Alignment:
Q  14 atcaggtgtcaacagattcgttgacaccaaatc 46  Q
    ||||||||||||| |||||||||||||||||||    
T  22798916 atcaggtgtcaacggattcgttgacaccaaatc 22798948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 14 - 161
Target Start/End: Original strand, 48717308 - 48717456
Alignment:
Q  14 atcaggtgtcaacagattcgttgacaccaaatcctagccgttctttgttttaatcttaatggctcacatttattcaccaacttgttcccgtggagactct 113  Q
    ||||||||||||  | |||||||||||||| || ||||||| |||  ||||||||||| |||||| |||||||||| | | ||||||  |||| ||||||    
T  48717308 atcaggtgtcaatgggttcgttgacaccaactcatagccgtccttcattttaatcttagtggctctcatttattcagctaattgttcatgtggggactct 48717407  T
Q  114 tcaaagaaaaacatactgc-cctctcatcttcttcttgaaggcactcat 161  Q
    | |||||||||||||  ||   |||||||||||||||||||| ||||||    
T  48717408 tgaaagaaaaacatatcgctgttctcatcttcttcttgaagggactcat 48717456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 48
Target Start/End: Complemental strand, 3689302 - 3689274
Alignment:
Q  20 tgtcaacagattcgttgacaccaaatcct 48  Q
    |||||||||||||||||||||||||||||    
T  3689302 tgtcaacagattcgttgacaccaaatcct 3689274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 48; Significance: 2e-18; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 16 - 147
Target Start/End: Original strand, 12919603 - 12919734
Alignment:
Q  16 caggtgtcaacagattcgttgacaccaaatcctagccgttctttgttttaatcttaatggctcacatttattcaccaacttgttcccgtggagactcttc 115  Q
    ||||||||||| | |||||| |||||||||||||  | || |||||||| |||||||||| |||||||||||||   | || ||  ||||| ||||||||    
T  12919603 caggtgtcaacgggttcgttaacaccaaatcctaatcattatttgttttgatcttaatggttcacatttattcaattaattattaacgtggggactcttc 12919702  T
Q  116 aaagaaaaacatactgccctctcatcttcttc 147  Q
    |||||||||||||   | ||||||||||||||    
T  12919703 aaagaaaaacatatcacactctcatcttcttc 12919734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 13 - 46
Target Start/End: Complemental strand, 53148649 - 53148616
Alignment:
Q  13 catcaggtgtcaacagattcgttgacaccaaatc 46  Q
    ||||||||||||||||||||||||||||||||||    
T  53148649 catcaggtgtcaacagattcgttgacaccaaatc 53148616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 16 - 55
Target Start/End: Complemental strand, 24158855 - 24158816
Alignment:
Q  16 caggtgtcaacagattcgttgacaccaaatcctagccgtt 55  Q
    ||||||||||||||||||||||||||||||| || |||||    
T  24158855 caggtgtcaacagattcgttgacaccaaatcttaaccgtt 24158816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 46
Target Start/End: Complemental strand, 53773624 - 53773591
Alignment:
Q  13 catcaggtgtcaacagattcgttgacaccaaatc 46  Q
    |||||||||||||| |||||||||||||||||||    
T  53773624 catcaggtgtcaacggattcgttgacaccaaatc 53773591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 46; Significance: 3e-17; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 32 - 149
Target Start/End: Original strand, 25084541 - 25084658
Alignment:
Q  32 cgttgacaccaaatcctagccgttctttgttttaatcttaatggctcacatttattcaccaacttgttcccgtggagactcttcaaagaaaaacatactg 131  Q
    |||||||||||||||||| || ||||||||||| ||||||||||| |||||||||| ||    |||||   |||  |||||||||||||||||||||       
T  25084541 cgttgacaccaaatcctaaccattctttgttttgatcttaatggcccacatttatttacttgattgttaaggtgtggactcttcaaagaaaaacatatca 25084640  T
Q  132 ccctctcatcttcttctt 149  Q
    | ||||||||||||||||    
T  25084641 cactctcatcttcttctt 25084658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 46
Target Start/End: Complemental strand, 4135582 - 4135549
Alignment:
Q  13 catcaggtgtcaacagattcgttgacaccaaatc 46  Q
    ||||||||||||||| ||||||||||||||||||    
T  4135582 catcaggtgtcaacatattcgttgacaccaaatc 4135549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 46
Target Start/End: Complemental strand, 7407041 - 7407008
Alignment:
Q  13 catcaggtgtcaacagattcgttgacaccaaatc 46  Q
    |||||||||||||||||||||||||||| |||||    
T  7407041 catcaggtgtcaacagattcgttgacactaaatc 7407008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 46
Target Start/End: Original strand, 8987804 - 8987837
Alignment:
Q  13 catcaggtgtcaacagattcgttgacaccaaatc 46  Q
    |||||||||||||| |||||||||||||||||||    
T  8987804 catcaggtgtcaacggattcgttgacaccaaatc 8987837  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 49
Target Start/End: Complemental strand, 19172610 - 19172577
Alignment:
Q  16 caggtgtcaacagattcgttgacaccaaatccta 49  Q
    ||||||||||| ||||||||||||||||||||||    
T  19172610 caggtgtcaacggattcgttgacaccaaatccta 19172577  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 13 - 49
Target Start/End: Original strand, 19171792 - 19171828
Alignment:
Q  13 catcaggtgtcaacagattcgttgacaccaaatccta 49  Q
    ||||| |||||||| ||||||||||||||||||||||    
T  19171792 catcaagtgtcaacggattcgttgacaccaaatccta 19171828  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 16 - 64
Target Start/End: Complemental strand, 25469121 - 25469073
Alignment:
Q  16 caggtgtcaacagattcgttgacaccaaatcctagccgttctttgtttt 64  Q
    ||||||||||| ||||||||||||||||||| || |||||  |||||||    
T  25469121 caggtgtcaacggattcgttgacaccaaatcttaaccgttgattgtttt 25469073  T

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Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 13 - 45
Target Start/End: Complemental strand, 37853173 - 37853141
Alignment:
Q  13 catcaggtgtcaacagattcgttgacaccaaat 45  Q
    |||||||||||||| ||||||||||||||||||    
T  37853173 catcaggtgtcaacggattcgttgacaccaaat 37853141  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 45
Target Start/End: Original strand, 505551 - 505583
Alignment:
Q  13 catcaggtgtcaacagattcgttgacaccaaat 45  Q
    |||||||||||||||||||||||||||||||||    
T  505551 catcaggtgtcaacagattcgttgacaccaaat 505583  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 49
Target Start/End: Original strand, 18820447 - 18820483
Alignment:
Q  13 catcaggtgtcaacagattcgttgacaccaaatccta 49  Q
    |||||||||||||| ||||||||||||||||||||||    
T  18820447 catcaggtgtcaacggattcgttgacaccaaatccta 18820483  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 16 - 47
Target Start/End: Complemental strand, 8669230 - 8669199
Alignment:
Q  16 caggtgtcaacagattcgttgacaccaaatcc 47  Q
    ||||||||||||||||||||||||||||||||    
T  8669230 caggtgtcaacagattcgttgacaccaaatcc 8669199  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 46
Target Start/End: Complemental strand, 22560605 - 22560572
Alignment:
Q  13 catcaggtgtcaacagattcgttgacaccaaatc 46  Q
    |||||||||||||| |||||||||||||||||||    
T  22560605 catcaggtgtcaacggattcgttgacaccaaatc 22560572  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 49
Target Start/End: Original strand, 40252040 - 40252073
Alignment:
Q  16 caggtgtcaacagattcgttgacaccaaatccta 49  Q
    ||||||||||| ||||||||||||||||||||||    
T  40252040 caggtgtcaacggattcgttgacaccaaatccta 40252073  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 46
Target Start/End: Original strand, 22559878 - 22559906
Alignment:
Q  18 ggtgtcaacagattcgttgacaccaaatc 46  Q
    |||||||||||||||||||||||||||||    
T  22559878 ggtgtcaacagattcgttgacaccaaatc 22559906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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