View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18269_low_17 (Length: 295)
Name: NF18269_low_17
Description: NF18269
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18269_low_17 |
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Alignment Details
Target: chr8 (Bit Score: 247; Significance: 1e-137; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 13 - 279
Target Start/End: Complemental strand, 12229545 - 12229279
Alignment:
| Q |
13 |
aaaatcggaaacaggtactctagctattccaacactattactactacttcccctagttttgtacttcacctctattgtaacgaaccttgcatgtaatggc |
112 |
Q |
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| T |
12229545 |
aaaatcggaaacaggtactctagctattccaacactattactactacttcctctagttttgtacttcacctctattgtaacgaaccttgcatgtaatggc |
12229446 |
T |
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| Q |
113 |
acgtcgatcactaccttctcgttccatgtaggataacttccgccttcagaatcaagtttcgtggtgctcacttcattattgcttccgtcacattgaaccg |
212 |
Q |
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| T |
12229445 |
atgtcgatcactaccttctcgttccatgtaggataacttccgccttcagaatcaagtttcgtggtgctcacttcattattgcttccgtcacattgaaccg |
12229346 |
T |
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| Q |
213 |
tgacaaatgtgtttccttttatggcttttttgttctcttggagattctctgctgacaaaatagttat |
279 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| ||||| |
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| T |
12229345 |
tgacaaatgtgtttccttttatggcttttttgttttcttggagattctccgctgacaaaattgttat |
12229279 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 13 - 279
Target Start/End: Complemental strand, 12239080 - 12238814
Alignment:
| Q |
13 |
aaaatcggaaacaggtactctagctattccaacactattactactacttcccctagttttgtacttcacctctattgtaacgaaccttgcatgtaatggc |
112 |
Q |
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| T |
12239080 |
aaaatcggaaaccggtattctagccattccaacactattactactacttcctctagttttgtacttcacctctattgtaacgaaccttgcatgtaatggc |
12238981 |
T |
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| Q |
113 |
acgtcgatcactaccttctcgttccatgtaggataacttccgccttcagaatcaagtttcgtggtgctcacttcattattgcttccgtcacattgaaccg |
212 |
Q |
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| T |
12238980 |
acgtcgatcactaccttctcgttccatgtaggataacttccgccttcagaatcaagtttcgtggtgctcacttcattattgcttccgtcacattgaaccg |
12238881 |
T |
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| Q |
213 |
tgacaaatgtgtttccttttatggcttttttgttctcttggagattctctgctgacaaaatagttat |
279 |
Q |
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| T |
12238880 |
tgacaaatgtgtttccttttatggcttttttgttctcttgaagattctccgctgacaaaattgttat |
12238814 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 13 - 279
Target Start/End: Complemental strand, 12235592 - 12235329
Alignment:
| Q |
13 |
aaaatcggaaacaggtactctagctattccaacactattactactacttcccctagttttgtacttcacctctattgtaacgaaccttgcatgtaatggc |
112 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||| || ||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
12235592 |
aaaatcggaaacaggtactctagctattccaacactattactact---tcctcttgttttgtacttcacctctattgttacgaaccttgcatgtaatggc |
12235496 |
T |
|
| Q |
113 |
acgtcgatcactaccttctcgttccatgtaggataacttccgccttcagaatcaagtttcgtggtgctcacttcattattgcttccgtcacattgaaccg |
212 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12235495 |
acgtcgatcactaccttctcgttccatgtaggataacttccgccttcagaatcaagtttcgtggtgctcacttcattattgcttccgtcacattgaacca |
12235396 |
T |
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| Q |
213 |
tgacaaatgtgtttccttttatggcttttttgttctcttggagattctctgctgacaaaatagttat |
279 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| ||||| |
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| T |
12235395 |
tgacaaatgtgtttccttttatggcttttttgttctcttgaagattctccgctgacaaaattgttat |
12235329 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 10 - 279
Target Start/End: Complemental strand, 12245624 - 12245355
Alignment:
| Q |
10 |
aagaaaatcggaaacaggtactctagctattccaacactattactactacttcccctagttttgtacttcacctctattgtaacgaaccttgcatgtaat |
109 |
Q |
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|||||||||||||||||||| |||||| |||||||||||||| |||||||| || || ||||||||||||||||||||||| | |||||||||||||||| |
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| T |
12245624 |
aagaaaatcggaaacaggtattctagccattccaacactattgctactactacctcttgttttgtacttcacctctattgttaggaaccttgcatgtaat |
12245525 |
T |
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| Q |
110 |
ggcacgtcgatcactaccttctcgttccatgtaggataacttccgccttcagaatcaagtttcgtggtgctcacttcattattgcttccgtcacattgaa |
209 |
Q |
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||||| || || || | |||||||||||||||||| |||||||| ||||| |||||||||||||||||||||||||| | ||||||||||||||||||| |
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| T |
12245524 |
ggcacatccattaccaacttctcgttccatgtagggtaacttcctccttcggaatcaagtttcgtggtgctcacttccctgttgcttccgtcacattgaa |
12245425 |
T |
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| Q |
210 |
ccgtgacaaatgtgtttccttttatggcttttttgttctcttggagattctctgctgacaaaatagttat |
279 |
Q |
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|||| || |||||||| |||||||||||||||||||||||||| |||||||||||||||||||| ||||| |
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| T |
12245424 |
ccgtaacgaatgtgttcccttttatggcttttttgttctcttgaagattctctgctgacaaaattgttat |
12245355 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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