View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18269_low_19 (Length: 280)
Name: NF18269_low_19
Description: NF18269
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18269_low_19 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 254; Significance: 1e-141; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 18 - 271
Target Start/End: Complemental strand, 12463011 - 12462758
Alignment:
| Q |
18 |
gcatgaatatcacacatacccaacttgtcaagagaaccagcaagagtcctggaggttactgccttagtaagcatatcagcaagttgttgttctgatttta |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12463011 |
gcatgaatatcacacatacccaacttgtcaagagaaccagcaagagtcctggaggttactgccttagtaagcatatcagcaagttgttgttctgatttta |
12462912 |
T |
|
| Q |
118 |
caaacggaaatgcaataataccagcttcaatcttttctttgatgaaatgcctatcaatttccacgtgttttgtgcgatcatgttggacagggttatgagc |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12462911 |
caaacggaaatgcaataataccagcttcaatcttttctttgatgaaatgcctatcaatttccacgtgttttgtgcgatcatgttggacagggttatgagc |
12462812 |
T |
|
| Q |
218 |
aatctctatggcagatttattgtcacagtaaagcttcattgcatcctcttgttc |
271 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12462811 |
aatctctatggcagatttattgtcacagtaaagcttcattgcatcctcttgttc |
12462758 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 138 - 247
Target Start/End: Complemental strand, 39745623 - 39745514
Alignment:
| Q |
138 |
ccagcttcaatcttttctttgatgaaatgcctatcaatttccacgtgttttgtgcgatcatgttggacagggttatgagcaatctctatggcagatttat |
237 |
Q |
| |
|
|||||||||| |||||||||||||||||| |||||||| || || |||||||| | ||||||||||||||| ||||||||||| |||| || ||| ||| |
|
|
| T |
39745623 |
ccagcttcaagcttttctttgatgaaatgtctatcaatctctacatgttttgttctatcatgttggacaggattatgagcaattgctattgctgatgtat |
39745524 |
T |
|
| Q |
238 |
tgtcacagta |
247 |
Q |
| |
|
| |||||||| |
|
|
| T |
39745523 |
tatcacagta |
39745514 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 18 - 271
Target Start/End: Complemental strand, 4246214 - 4245961
Alignment:
| Q |
18 |
gcatgaatatcacacatacccaacttgtcaagagaaccagcaagagtcctggaggttactgccttagtaagcatatcagcaagttgttgttctgatttta |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4246214 |
gcatgaatatcacacatacccaacttgtcaagagaaccagcaagagtcctggaggttactgccttagtaagcatatcagcaagttgttgttctgatttta |
4246115 |
T |
|
| Q |
118 |
caaacggaaatgcaataataccagcttcaatcttttctttgatgaaatgcctatcaatttccacgtgttttgtgcgatcatgttggacagggttatgagc |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4246114 |
caaacggaaatgcaataataccagcttcaatcttttctttgatgaaatgcctatcaatttccacgtgttttgtgcgatcatgttggacagggttatgagc |
4246015 |
T |
|
| Q |
218 |
aatctctatggcagatttattgtcacagtaaagcttcattgcatcctcttgttc |
271 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4246014 |
aatctctatggcagatttattgtcacagtaaagcttcattgcatcctcttgttc |
4245961 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 254; Significance: 1e-141; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 18 - 271
Target Start/End: Complemental strand, 40092654 - 40092401
Alignment:
| Q |
18 |
gcatgaatatcacacatacccaacttgtcaagagaaccagcaagagtcctggaggttactgccttagtaagcatatcagcaagttgttgttctgatttta |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40092654 |
gcatgaatatcacacatacccaacttgtcaagagaaccagcaagagtcctggaggttactgccttagtaagcatatcagcaagttgttgttctgatttta |
40092555 |
T |
|
| Q |
118 |
caaacggaaatgcaataataccagcttcaatcttttctttgatgaaatgcctatcaatttccacgtgttttgtgcgatcatgttggacagggttatgagc |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40092554 |
caaacggaaatgcaataataccagcttcaatcttttctttgatgaaatgcctatcaatttccacgtgttttgtgcgatcatgttggacagggttatgagc |
40092455 |
T |
|
| Q |
218 |
aatctctatggcagatttattgtcacagtaaagcttcattgcatcctcttgttc |
271 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40092454 |
aatctctatggcagatttattgtcacagtaaagcttcattgcatcctcttgttc |
40092401 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 81 - 244
Target Start/End: Original strand, 40453744 - 40453907
Alignment:
| Q |
81 |
ttagtaagcatatcagcaagttgttgttctgattttacaaacggaaatgcaataataccagcttcaatcttttctttgatgaaatgcctatcaatttcca |
180 |
Q |
| |
|
||||| |||||||||| | |||||| || ||| ||||||||||||| |||| | ||||| |||| || || ||||||||||| ||||||||||| | |
|
|
| T |
40453744 |
ttagtgagcatatcagttaattgttgctcagatcttacaaacggaaaaacaattgtcccagcgtcaagtttctccttgatgaaatgtctatcaatttcaa |
40453843 |
T |
|
| Q |
181 |
cgtgttttgtgcgatcatgttggacagggttatgagcaatctctatggcagatttattgtcaca |
244 |
Q |
| |
|
| |||||||| ||||||||||||||||| ||||| |||||||||||||||||| |||| ||||| |
|
|
| T |
40453844 |
catgttttgtccgatcatgttggacaggattatgtgcaatctctatggcagatgtattatcaca |
40453907 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 246; Significance: 1e-136; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 18 - 271
Target Start/End: Original strand, 8189507 - 8189760
Alignment:
| Q |
18 |
gcatgaatatcacacatacccaacttgtcaagagaaccagcaagagtcctggaggttactgccttagtaagcatatcagcaagttgttgttctgatttta |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8189507 |
gcatgaatatcacacatacccaacttgtcaagagaaccagcaagagtcctggaggttactgccttagtaagcatatcagcaagttgttgttctgatttta |
8189606 |
T |
|
| Q |
118 |
caaacggaaatgcaataataccagcttcaatcttttctttgatgaaatgcctatcaatttccacgtgttttgtgcgatcatgttggacagggttatgagc |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
8189607 |
caaacggaaatgcaataataccagcttcaatcttttctttgatgaaatgcctatcaatttccacgtgttttgtgcgatcatgttggagagggttatgagc |
8189706 |
T |
|
| Q |
218 |
aatctctatggcagatttattgtcacagtaaagcttcattgcatcctcttgttc |
271 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
8189707 |
aatctctatggcagatttattgtcacagtaaagcttcattgaatcctcttgttc |
8189760 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 138 - 247
Target Start/End: Original strand, 9717514 - 9717623
Alignment:
| Q |
138 |
ccagcttcaatcttttctttgatgaaatgcctatcaatttccacgtgttttgtgcgatcatgttggacagggttatgagcaatctctatggcagatttat |
237 |
Q |
| |
|
||||||||| |||||||||||||||||| |||||||| || || |||||||| | ||||||||||||||| ||||||||||| |||| || ||| ||| |
|
|
| T |
9717514 |
ccagcttcacgcttttctttgatgaaatgtctatcaatctctacatgttttgttctatcatgttggacaggattatgagcaattgctattgctgatgtat |
9717613 |
T |
|
| Q |
238 |
tgtcacagta |
247 |
Q |
| |
|
| |||||||| |
|
|
| T |
9717614 |
tatcacagta |
9717623 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 138 - 220
Target Start/End: Original strand, 27514079 - 27514161
Alignment:
| Q |
138 |
ccagcttcaatcttttctttgatgaaatgcctatcaatttccacgtgttttgtgcgatcatgttggacagggttatgagcaat |
220 |
Q |
| |
|
|||||||||| |||||||||||||||||| |||||||| || || |||||||| | ||||||||||||| | ||||||||||| |
|
|
| T |
27514079 |
ccagcttcaagcttttctttgatgaaatgtctatcaatctctacatgttttgttctatcatgttggacaagattatgagcaat |
27514161 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 18 - 271
Target Start/End: Complemental strand, 8018640 - 8018387
Alignment:
| Q |
18 |
gcatgaatatcacacatacccaacttgtcaagagaaccagcaagagtcctggaggttactgccttagtaagcatatcagcaagttgttgttctgatttta |
117 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8018640 |
gcatgattatcacacatacccaacttgtcaagagaaccagcaagagtcctggaggttactgccttagtaagcatatcagcaagttgttgttctgatttta |
8018541 |
T |
|
| Q |
118 |
caaacggaaatgcaataataccagcttcaatcttttctttgatgaaatgcctatcaatttccacgtgttttgtgcgatcatgttggacagggttatgagc |
217 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8018540 |
caaacggaaattcaataataccagcttcaatcttttctctgatgaaatgcctatcaatttccacgtgttttgtgcgatcatgttggacagggttatgagc |
8018441 |
T |
|
| Q |
218 |
aatctctatggcagatttattgtcacagtaaagcttcattgcatcctcttgttc |
271 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8018440 |
aatctctatggcagatttattgtcacagtaaagcttcattgcatcctcttgttc |
8018387 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 81 - 244
Target Start/End: Complemental strand, 32203903 - 32203740
Alignment:
| Q |
81 |
ttagtaagcatatcagcaagttgttgttctgattttacaaacggaaatgcaataataccagcttcaatcttttctttgatgaaatgcctatcaatttcca |
180 |
Q |
| |
|
||||| ||||||||||| | |||||| || ||| ||||||||||||| |||| | ||||| |||| || || ||||||||||| ||||||||||| | |
|
|
| T |
32203903 |
ttagtgagcatatcagctaattgttgctcagatcttacaaacggaaaaacaattgtcccagcgtcaagtttctccttgatgaaatgtctatcaatttcaa |
32203804 |
T |
|
| Q |
181 |
cgtgttttgtgcgatcatgttggacagggttatgagcaatctctatggcagatttattgtcaca |
244 |
Q |
| |
|
| |||||||| ||||||||||||||||| ||||| |||||||||||||||||| |||| ||||| |
|
|
| T |
32203803 |
catgttttgtccgatcatgttggacaggattatgtgcaatctctatggcagatgtattatcaca |
32203740 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 138 - 247
Target Start/End: Original strand, 56389836 - 56389945
Alignment:
| Q |
138 |
ccagcttcaatcttttctttgatgaaatgcctatcaatttccacgtgttttgtgcgatcatgttggacagggttatgagcaatctctatggcagatttat |
237 |
Q |
| |
|
|||||||||| |||||||||||||||||| |||||||| || || |||||||| | ||||||||||||||| ||||||||||| |||| || ||| ||| |
|
|
| T |
56389836 |
ccagcttcaagcttttctttgatgaaatgtctatcaatctctacatgttttgttctatcatgttggacaggattatgagcaattgctattgctgatgtat |
56389935 |
T |
|
| Q |
238 |
tgtcacagta |
247 |
Q |
| |
|
| |||||||| |
|
|
| T |
56389936 |
tatcacagta |
56389945 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University