View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18269_low_22 (Length: 254)
Name: NF18269_low_22
Description: NF18269
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18269_low_22 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 164; Significance: 9e-88; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 3290404 - 3290653
Alignment:
| Q |
1 |
tacaacatgctttcaaaggtaatattacaaattccttttgatgtcagcaatttaagttggtatgatacgttttttccttagatttttggtgactgtaata |
100 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3290404 |
tacaacatgctttcaaaggtaatattaaaaattccttttgatgtcagcaatttaagttggtatgatacgttttttccttagatttttggtgactgtaata |
3290503 |
T |
|
| Q |
101 |
ccacgtattcacatgggttcttgacttacttgtcaagttactttggataaatatatnnnnnnnnntgaatgtttcaaaaccctaagacctact------- |
193 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||| |
|
|
| T |
3290504 |
ccacgtattcacatgggttcttgacttacttgtcaagttactttggataaatataaaaaaaaaaaaaaatgttttaaaaccctaagacctacttgtgact |
3290603 |
T |
|
| Q |
194 |
---ataccacgtagacatgcttgtgaagtcacttccctcattatcctttg |
240 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
3290604 |
gtaataccacgtagacatgcttgtgaagtcacttccctcatcatcctttg |
3290653 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 24 - 118
Target Start/End: Original strand, 3288282 - 3288379
Alignment:
| Q |
24 |
attacaaattccttttgatgtcagcaatttaagttggtatgatacgttttttcctt---agatttttggtgactgtaataccacgtattcacatgggt |
118 |
Q |
| |
|
|||| ||||||||||||||||||||| || || ||||||||||| |||||| || ||||| | |||||||||||||||||| |||||||||| |
|
|
| T |
3288282 |
attaaaaattccttttgatgtcagcagttcaaattggtatgatatgtttttcttttaaaagattcctagtgactgtaataccacgttgtcacatgggt |
3288379 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University