View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18269_low_23 (Length: 251)
Name: NF18269_low_23
Description: NF18269
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18269_low_23 |
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| [»] scaffold0036 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 86; Significance: 3e-41; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 11077188 - 11077103
Alignment:
| Q |
1 |
aagctataattctttgattgtaaccctttaaccaattaccattggactctcgaaaaagaccactacacacgcaaattctattgaat |
86 |
Q |
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| T |
11077188 |
aagctataattctttgattgtaaccctttaaccaattaccattggactctcgaaaaagaccactacacacgcaaattctattgaat |
11077103 |
T |
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Target: chr2 (Bit Score: 35; Significance: 0.00000000009; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 82 - 168
Target Start/End: Original strand, 29861918 - 29862004
Alignment:
| Q |
82 |
tgaatatagaaattgcattaatggatttcaagaaataaatataggttcattttaaaaccctaatcagagagagtttagttgctcatg |
168 |
Q |
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| T |
29861918 |
tgaataaagaagttacattaattaatttcaacaaacaaatagaggtacatcataaaacgctaatcaaagagagtttagttgctcatg |
29862004 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 92 - 168
Target Start/End: Original strand, 18682319 - 18682395
Alignment:
| Q |
92 |
aattgcattaatggatttcaagaaataaatataggttcattttaaaaccctaatcagagagagtttagttgctcatg |
168 |
Q |
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| T |
18682319 |
aattgcattaataacttttaacaaataaacaaaggttcatcttagaaccctaattagagggtgtttagttgctcatg |
18682395 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 89 - 177
Target Start/End: Complemental strand, 34077659 - 34077571
Alignment:
| Q |
89 |
agaaattgcattaatggatttcaagaaataaatataggttcattttaaaaccctaatcagagagagtttagttgctcatgacaagaaaa |
177 |
Q |
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| T |
34077659 |
agaaattgcattaacgaatttcaacaaataaatagagactcattttagaactctaatcaaaggaagtttggttactcatggcaataaaa |
34077571 |
T |
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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 114 - 168
Target Start/End: Original strand, 39249649 - 39249703
Alignment:
| Q |
114 |
aaataaatataggttcattttaaaaccctaatcagagagagtttagttgctcatg |
168 |
Q |
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| T |
39249649 |
aaataaatagaggttcattttagaaccctaatcttagagtgtttagttactcatg |
39249703 |
T |
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Target: scaffold0036 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0036
Description:
Target: scaffold0036; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 82 - 143
Target Start/End: Original strand, 28728 - 28789
Alignment:
| Q |
82 |
tgaatatagaaattgcattaatggatttcaagaaataaatataggttcattttaaaacccta |
143 |
Q |
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| T |
28728 |
tgaataaagaaattgcattaatagattttaccaaataaataaaggttcatcttagaacccta |
28789 |
T |
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