View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18269_low_24 (Length: 237)
Name: NF18269_low_24
Description: NF18269
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18269_low_24 |
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Alignment Details
Target: chr4 (Bit Score: 193; Significance: 1e-105; HSPs: 9)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 3290033 - 3289812
Alignment:
| Q |
1 |
caatgagttcatggcaagaataaagatatcaagcttnnnnnnnttgtggaagaagataaagaaagcaaagaagaggagaatttttagaagatcttcgccg |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3290033 |
caatgagttcatggcaagaataaagatatcaagcttaaaaaaattgtggaagaagataaagaaagcaaagaagaggagaatttttagaagatcttcgccg |
3289934 |
T |
|
| Q |
101 |
gtgtttctatatgatccttgctcttacttacaaaattttgatgatggttgttattccattgaccctgataatttttcaaggtcattctcagctcgatttg |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
3289933 |
gtgtttctatatgatccttgctcttacttacaaaattttgatgatggttgttattccattgaccctgataatttttcaaggtcattctctgctcgatttg |
3289834 |
T |
|
| Q |
201 |
cagccccaccctccaagatttt |
222 |
Q |
| |
|
||| |||||||||||||||||| |
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| T |
3289833 |
caggcccaccctccaagatttt |
3289812 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 67 - 222
Target Start/End: Complemental strand, 3271297 - 3271148
Alignment:
| Q |
67 |
aaagaagaggagaatttttagaagatcttcgccggtgtttctatatgatccttgctcttacttacaaaattttgatgatggttgttattccattgaccct |
166 |
Q |
| |
|
|||||||| ||||||||||||| |||||| || |||||||||||||||| ||||||||| |||||||| ||||||||||||| ||||||||||| |
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| T |
3271297 |
aaagaagatgagaatttttagatcatcttcacctgtgtttctatatgatcattgctcttatttacaaaactttgatgatggtt------ccattgaccct |
3271204 |
T |
|
| Q |
167 |
gataatttttcaaggtcattctcagctcgatttgcagccccaccctccaagatttt |
222 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
3271203 |
gataatttttcaaggtcattctcagctcgatttgcaggaccaccctccaagatttt |
3271148 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 1 - 218
Target Start/End: Complemental strand, 3295978 - 3295761
Alignment:
| Q |
1 |
caatgagttcatggcaagaataaagatatcaagcttnnnnnnnttgtggaagaagataaagaaagcaaagaagaggagaatttttagaagatcttcgccg |
100 |
Q |
| |
|
|||||| || ||||| ||||| |||||||||||||| |||||||||||||| ||||||| |||||| |||||||| |||| | |||||| || |
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| T |
3295978 |
caatgaatttatggctagaatgaagatatcaagcttgaaaaatttgtggaagaagatcaagaaagaaaagaaaaggagaatatttacatcatcttctccc |
3295879 |
T |
|
| Q |
101 |
gtgtttctatatgatccttgctcttacttacaaaattttgatgatggttgttattccattgaccctgataatttttcaaggtcattctcagctcgatttg |
200 |
Q |
| |
|
||||||| ||||||| || |||| || |||||||||||||||||||||||||||| | ||| |||||| ||||||||||||||||| |||| ||||||| |
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| T |
3295878 |
gtgtttcaatatgattctagctcatatttacaaaattttgatgatggttgttattttactgatcctgatgatttttcaaggtcattcacagcccgatttg |
3295779 |
T |
|
| Q |
201 |
cagccccaccctccaaga |
218 |
Q |
| |
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|||| ||||||||||||| |
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|
| T |
3295778 |
cagcaccaccctccaaga |
3295761 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 11 - 221
Target Start/End: Complemental strand, 3256965 - 3256758
Alignment:
| Q |
11 |
atggcaagaataaagatatcaagcttnnnnnnnttgtggaagaagataaagaaagcaaagaagaggagaatttttagaagatcttcgccggtgtttctat |
110 |
Q |
| |
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||||||||||| |||||| ||||||| |||||||||||||| ||||||| ||||||||||||||| |||||| | || || || ||| ||| |
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| T |
3256965 |
atggcaagaatgaagatagcaagcttaaaaaaattgtggaagaagattaagaaagaaaagaagaggagaatatttagatcgccctcaccagtatttatat |
3256866 |
T |
|
| Q |
111 |
atgatccttgctcttacttacaaaattttgatgatggttgttattccattgaccctgataatttttcaaggtcattctcagctcgatttgcagccccacc |
210 |
Q |
| |
|
||||| || |||||||||||||||||||||||||||| | |||||||||||||||||||||| |||||||||||||||||||||||| || || | |
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|
| T |
3256865 |
atgattctaattcttacttacaaaattttgatgatggtt---actccattgaccctgataattttttaaggtcattctcagctcgatttgctgcaccgtc |
3256769 |
T |
|
| Q |
211 |
ctccaagattt |
221 |
Q |
| |
|
||||||||||| |
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|
| T |
3256768 |
ctccaagattt |
3256758 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 44 - 222
Target Start/End: Complemental strand, 3284834 - 3284662
Alignment:
| Q |
44 |
ttgtggaagaagataaagaaagcaaagaagaggagaatttttagaagatcttcgccggtgtttctatatgatccttgctcttacttacaaaattttgatg |
143 |
Q |
| |
|
|||||||||||||| || | | |||||||||||||||||||||| |||||| || || ||| ||||||||| ||| |||||||||||||| ||||||| |
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|
| T |
3284834 |
ttgtggaagaagatcaatagacaaaagaagaggagaatttttagatcatcttcacccgtatttttatatgatcgttgttcttacttacaaaactttgatg |
3284735 |
T |
|
| Q |
144 |
atggttgttattccattgaccctgataatttttcaaggtcattctcagctcgatttgcagccccaccctccaagatttt |
222 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||| ||||||||||||||| | |||||||| |||||||| |
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|
| T |
3284734 |
atggtta------cattgaccctgataatttttcaaggtcattatcagctcgatttgcaacaccaccctcaaagatttt |
3284662 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 44 - 204
Target Start/End: Complemental strand, 3250725 - 3250568
Alignment:
| Q |
44 |
ttgtggaagaagataaagaaagcaaagaagaggagaatttttagaagatcttcgccggtgtttctatatgatccttgctcttacttacaaaattttgatg |
143 |
Q |
| |
|
||||||| |||||| |||| || || |||||||||||||||||| |||||| || |||||| ||||||||||| |||||||||||| ||||| |||| |
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| T |
3250725 |
ttgtggaggaagatcaagagagagaaaaagaggagaatttttagatcatcttcacctgtgtttatatatgatcctaactcttacttacagaatttcgatg |
3250626 |
T |
|
| Q |
144 |
atggttgttattccattgaccctgataatttttcaaggtcattctcagctcgatttgcagc |
204 |
Q |
| |
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||| ||||||||| || |||||||| ||||||| ||||||||||||||||| ||||| |
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| T |
3250625 |
atg---gttattccaccgatgctgataatgtttcaagatcattctcagctcgattcgcagc |
3250568 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 47 - 202
Target Start/End: Complemental strand, 3287919 - 3287759
Alignment:
| Q |
47 |
tggaagaagataaagaaagcaaagaagaggagaatttttagaagatcttcgccggtgtttctatatgatccttgc--tcttacttacaaaatttt-gatg |
143 |
Q |
| |
|
||||||||||| ||||||| ||| ||||||| |||||||||| |||| | |||||||||||||||||| | |||||||||||||||||| |||| |
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|
| T |
3287919 |
tggaagaagatcaagaaagaaaaaaagaggataatttttagatccccttcacttgtgtttctatatgatcctagtattcttacttacaaaatttttgatg |
3287820 |
T |
|
| Q |
144 |
atg--gttgttattccattgaccctgataatttttcaaggtcattctcagctcgatttgca |
202 |
Q |
| |
|
||| || ||||||||| |||||| ||||||||||||| |||||| |||||| |||||||| |
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|
| T |
3287819 |
atgtggtagttattccactgacccggataatttttcaaagtcattttcagcttgatttgca |
3287759 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 150 - 221
Target Start/End: Complemental strand, 3275203 - 3275132
Alignment:
| Q |
150 |
gttattccattgaccctgataatttttcaaggtcattctcagctcgatttgcagccccaccctccaagattt |
221 |
Q |
| |
|
||||||||| ||| ||||||||||||||||||||||| || |||||||||||||| ||| |||||||||||| |
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|
| T |
3275203 |
gttattccactgatcctgataatttttcaaggtcattttcggctcgatttgcagcaccatcctccaagattt |
3275132 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 9 - 148
Target Start/End: Complemental strand, 3280101 - 3279962
Alignment:
| Q |
9 |
tcatggcaagaataaagatatcaagcttnnnnnnnttgtggaagaagataaagaaagcaaagaagaggagaatttttagaagatcttcgccggtgtttct |
108 |
Q |
| |
|
||||||||||||| |||||| ||||||| |||||||||||||| | ||||| ||||||||||| ||| |||| | |||| || || ||||| |
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|
| T |
3280101 |
tcatggcaagaatgaagatagcaagcttaaaaaaattgtggaagaagattatgaaagaaaagaagaggaaaatatttaaatcgccttcaccagtatttct |
3280002 |
T |
|
| Q |
109 |
atatgatccttgctcttacttacaaaattttgatgatggt |
148 |
Q |
| |
|
||||||| || ||||||||||||||||||||||||||| |
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|
| T |
3280001 |
atatgattctaattcttacttacaaaattttgatgatggt |
3279962 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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