View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18269_low_29 (Length: 204)
Name: NF18269_low_29
Description: NF18269
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18269_low_29 |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 198; Significance: 1e-108; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 7 - 204
Target Start/End: Original strand, 17348500 - 17348697
Alignment:
| Q |
7 |
tttagacctgttagtgattctggttttggttttatcaatggtattgaagtgttttctgctcctgaagattatgttgtagattatggagctaggtttgttg |
106 |
Q |
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| T |
17348500 |
tttagacctgttagtgattctggttttggttttatcaatggtattgaagtgttttctgctcctgaagattatgttgtagattatggagctaggtttgttg |
17348599 |
T |
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| Q |
107 |
gtccttttggtgttagggaatacaagaatctttctaatgttttagaaactattcataggattaatgttggaggtgaaaaattaactccttttaatgat |
204 |
Q |
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| T |
17348600 |
gtccttttggtgttagggaatacaagaatctttctaatgttttagaaactattcataggattaatgttggaggtgaaaaattaactccttttaatgat |
17348697 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 59 - 122
Target Start/End: Original strand, 17363829 - 17363892
Alignment:
| Q |
59 |
tttctgctcctgaagattatgttgtagattatggagctaggtttgttggtccttttggtgttag |
122 |
Q |
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| T |
17363829 |
tttctgctcctgaagattttgtagtagattatggagcaagatttgttggtacttttggttttag |
17363892 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 45; Significance: 8e-17; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 52 - 203
Target Start/End: Complemental strand, 45099475 - 45099321
Alignment:
| Q |
52 |
gaagtgttttctgctcctgaagattatgttgtagattatggagctaggtttgttggtccttttggtgttagggaatacaagaatctt---tctaatgttt |
148 |
Q |
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| T |
45099475 |
gaagtgtttactgctcctgaagattttgttatagattatggaacaaggttggttggtccttctggtgtggaagagtatagaaatctttcatctcaggttt |
45099376 |
T |
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| Q |
149 |
tagaaactattcataggattaatgttggaggtgaaaaattaactccttttaatga |
203 |
Q |
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| T |
45099375 |
tggaaactgttcataggattaatgtaggaggtatgaaaataactccttttaatga |
45099321 |
T |
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