View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18269_low_3 (Length: 641)

Name: NF18269_low_3
Description: NF18269
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18269_low_3
NF18269_low_3
[»] chr5 (3 HSPs)
chr5 (202-623)||(7926880-7927301)
chr5 (82-198)||(30964673-30964797)
chr5 (87-133)||(35836303-35836349)
[»] chr4 (1 HSPs)
chr4 (82-196)||(26144947-26145069)
[»] chr1 (2 HSPs)
chr1 (87-144)||(29633680-29633737)
chr1 (83-189)||(51946197-51946312)
[»] chr8 (2 HSPs)
chr8 (89-196)||(41076478-41076595)
chr8 (89-196)||(42009169-42009285)
[»] chr3 (2 HSPs)
chr3 (83-134)||(6102022-6102073)
chr3 (147-196)||(6100982-6101031)
[»] chr6 (1 HSPs)
chr6 (83-124)||(31047199-31047240)


Alignment Details
Target: chr5 (Bit Score: 410; Significance: 0; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 202 - 623
Target Start/End: Complemental strand, 7927301 - 7926880
Alignment:
Q  202 ttatttactagggtggttgggtaataacagcccaggaaggtgggaaaattatcccgctcattggcgtagaaatcaaagtctcactaatttgatttcactt 301  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7927301 ttatttactagggtggttgggtaataacagcccaggaaggtgggaaaattatcccgctcattggcgtagaaatcaaagtctcactaatttgatttcactt 7927202  T
Q  302 tgtgatgaatctcaaactcacactctccttcttcccatcaccatcttccaccatggaagctcgtctcaaaatcttcaacccttcccttctgggtcaccgc 401  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7927201 tgtgatgaatctcaaactcacactctccttcttcccatcaccatcttccaccatggaagctcgtctcaaaatcttcaacccttcccttctgggtcaccgc 7927102  T
Q  402 ttagcctcaaaaaccaaaacctccacacccattttcccttctcaccattaccactacaaccctcttcaaaaaccactcaaaatctcatcaactctcactc 501  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7927101 ttagcctcaaaaaccaaaacctccacacccattttcccttcacaccattaccactacaaccctcttcaaaaaccactcaaaatctcatcaactctcactc 7927002  T
Q  502 gtttttctcactcacccattcctccaaattctaatcctcattgtcatagattcttctcttcactcacatcttctaaaaatctcaacttttcaatacccaa 601  Q
    ||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7927001 gtttttctcactcacccattcctccaaattcgaatcctcatagtcatagattcttctcttcactcacatcttctaaaaatctcaacttttcaatacccaa 7926902  T
Q  602 taacactctcaacaaccccttt 623  Q
    ||||||||||||||||||||||    
T  7926901 taacactctcaacaaccccttt 7926880  T

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Target: chr5; HSP #2
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 82 - 198
Target Start/End: Original strand, 30964673 - 30964797
Alignment:
Q  82 tcaaggtttatatgagttttgactaaactacccttcattaaaagataaaataccaaaacta----ccat----gggtgtatcagagtgtgttgccagcta 173  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    ||||     ||||||  ||||||||||||||||||    
T  30964673 tcaaggtttatatgagttttgactaaactacccttcattaaaagatgaaataccaaaactatcctccatatggaggtgtacaagagtgtgttgccagcta 30964772  T
Q  174 agtgtgttcacctatcaggactcat 198  Q
    |||||||||||||||||||||||||    
T  30964773 agtgtgttcacctatcaggactcat 30964797  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 87 - 133
Target Start/End: Original strand, 35836303 - 35836349
Alignment:
Q  87 gtttatatgagttttgactaaactacccttcattaaaagataaaata 133  Q
    |||||||||| || |||| |||||||||||||||||||||| |||||    
T  35836303 gtttatatgaattatgacaaaactacccttcattaaaagatgaaata 35836349  T

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Target: chr4 (Bit Score: 69; Significance: 1e-30; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 82 - 196
Target Start/End: Complemental strand, 26145069 - 26144947
Alignment:
Q  82 tcaaggtttatatgagttttgactaaactacccttcattaaaagataaaataccaaaacta----ccat----gggtgtatcagagtgtgttgccagcta 173  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    ||||     ||||||  ||||||||||||||||||    
T  26145069 tcaaggtttatatgagttttgactaaactacccttcattaaaagatgaaataccaaaactatcctccatatggaggtgtacaagagtgtgttgccagcta 26144970  T
Q  174 agtgtgttcacctatcaggactc 196  Q
    |||||||||||| ||||||||||    
T  26144969 agtgtgttcacccatcaggactc 26144947  T

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Target: chr1 (Bit Score: 46; Significance: 6e-17; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 87 - 144
Target Start/End: Original strand, 29633680 - 29633737
Alignment:
Q  87 gtttatatgagttttgactaaactacccttcattaaaagataaaataccaaaactacc 144  Q
    ||||||||| |||||||| |||||||||||||||||||||| ||||||||||||||||    
T  29633680 gtttatatgggttttgacaaaactacccttcattaaaagatgaaataccaaaactacc 29633737  T

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Target: chr1; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 83 - 189
Target Start/End: Original strand, 51946197 - 51946312
Alignment:
Q  83 caaggtttatatgagttttgactaaactacccttcattaaaagataaaataccaaaactaccat---------gggtgtatcagagtgtgttgccagcta 173  Q
    ||||||||||||| |||||||| |||||||||||||||||||||  |||||| ||||||| |||         |||||||| || |||||||||  ||||    
T  51946197 caaggtttatatgggttttgacaaaactacccttcattaaaagaagaaatactaaaactatcatgccacatgggggtgtataagggtgtgttgcatgcta 51946296  T
Q  174 agtgtgttcacctatc 189  Q
    ||||||||||||||||    
T  51946297 agtgtgttcacctatc 51946312  T

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Target: chr8 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 89 - 196
Target Start/End: Original strand, 41076478 - 41076595
Alignment:
Q  89 ttatatgagttttgactaaactacccttcattaaaagataaaataccaaaactaccat----------gggtgtatcagagtgtgttgccagctaagtgt 178  Q
    ||||||| |||||||| |||||||||||||||||||| | |||||||||||||||| |          |||||||  |||||||||||||| |||||  |    
T  41076478 ttatatgggttttgacaaaactacccttcattaaaaggtgaaataccaaaactaccctgccacatggggggtgtacaagagtgtgttgccacctaagcat 41076577  T
Q  179 gttcacctatcaggactc 196  Q
    ||||||||||||||||||    
T  41076578 gttcacctatcaggactc 41076595  T

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Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 89 - 196
Target Start/End: Original strand, 42009169 - 42009285
Alignment:
Q  89 ttatatgagttttgactaaactacccttcattaaaagataaaataccaaaactac-------catggg--tgtatcagagtgtgttgccagctaagtgtg 179  Q
    ||||||| |||||||| |||||||||||||||||||| | ||||||| |||||||       ||||||  ||||  |||||||||||||| |||||  ||    
T  42009169 ttatatgggttttgacaaaactacccttcattaaaaggtgaaataccgaaactaccctgccacatggggatgtacaagagtgtgttgccacctaagcatg 42009268  T
Q  180 ttcacctatcaggactc 196  Q
    |||||||||||||||||    
T  42009269 ttcacctatcaggactc 42009285  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000006; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 83 - 134
Target Start/End: Complemental strand, 6102073 - 6102022
Alignment:
Q  83 caaggtttatatgagttttgactaaactacccttcattaaaagataaaatac 134  Q
    ||||||||||||| |||||||| ||||||| |||||||||||||| ||||||    
T  6102073 caaggtttatatgggttttgacaaaactactcttcattaaaagatgaaatac 6102022  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 147 - 196
Target Start/End: Complemental strand, 6101031 - 6100982
Alignment:
Q  147 gggtgtatcagagtgtgttgccagctaagtgtgttcacctatcaggactc 196  Q
    |||||||| || | |||||||||||||| |||||||||||||||| ||||    
T  6101031 gggtgtataagggggtgttgccagctaaatgtgttcacctatcagcactc 6100982  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 83 - 124
Target Start/End: Original strand, 31047199 - 31047240
Alignment:
Q  83 caaggtttatatgagttttgactaaactacccttcattaaaa 124  Q
    ||||||||||||| |||||||| |||||||||||||||||||    
T  31047199 caaggtttatatgggttttgacaaaactacccttcattaaaa 31047240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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