View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18269_low_4 (Length: 543)
Name: NF18269_low_4
Description: NF18269
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18269_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 514; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 514; E-Value: 0
Query Start/End: Original strand, 1 - 526
Target Start/End: Complemental strand, 4302864 - 4302339
Alignment:
| Q |
1 |
tgcagaacaccaaatggtgagagtaccctttgtataatgtttcttggttccactttatataagcctttaataaagcttaaaaatacattcacaagatatg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4302864 |
tgcagaacaccaaatggtgagagtacccttagtataatgtttcttggttccactttatataagcctttaataaagcttaaaaatacattcacaagatatg |
4302765 |
T |
|
| Q |
101 |
cataatattgatcaagagtggaggctttgtttatcaagaaactgacataatagcatttcacatagacattacttccatgtttctcatccaccactatttt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
4302764 |
cataatattgatcaagagtggaggctttgtttatcaagaaactgacataatagcatttcacatagacattacttccatgtttctcatccaccaccatttt |
4302665 |
T |
|
| Q |
201 |
tccatcagttgatccattgtcactagctaggactttaatgggcttcacctcaaatttcggcttcataagcaaaaattctatactagcacaagccttcaga |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4302664 |
tccatcagttgatccattgtcactagctaggactttaatgggcttcacctcaaatttcggcttcataagcaaaaattctatactagcacaagccttcaga |
4302565 |
T |
|
| Q |
301 |
agctcattcttgttaacaccatatttctttgtggtcaagacatttgcatggcatttagatttttcaaaaggattggctagctcatctccaagtttttgat |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4302564 |
agctcattcttgttaacaccatatttctttgtggtcaagacatttgcatggcatttagatttttcaaaaggattggctagctcatctccaagtttttgat |
4302465 |
T |
|
| Q |
401 |
ctatgtgaaatatctgaaacgcttctgcaaaatccataacagtaagaaaacaataaggttcatctttatttgcccaatattacattttttcttggacctt |
500 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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|
| T |
4302464 |
ctatgtgaaatatctgaaacgcttctgcaaaatccataacagtaagaaaacaataaggttcatctttatttgcccaatattacattttttcttgggcctt |
4302365 |
T |
|
| Q |
501 |
gatacacaatttgtccatctgtaagc |
526 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
4302364 |
gatacacaatttgtccatctgtaagc |
4302339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 162; Significance: 3e-86; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 260 - 481
Target Start/End: Original strand, 2163340 - 2163561
Alignment:
| Q |
260 |
gcttcataagcaaaaattctatactagcacaagccttcagaagctcattcttgttaacaccatatttctttgtggtcaagacatttgcatggcatttaga |
359 |
Q |
| |
|
|||||||||||||||||||| | ||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||| ||||||||||||| || |
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|
| T |
2163340 |
gcttcataagcaaaaattctctgctagcacaagccttcagaagctccttcttgttaacaccgtatttctttgtggtcaagacacttgcatggcatttcga |
2163439 |
T |
|
| Q |
360 |
tttttcaaaaggattggctagctcatctccaagtttttgatctatgtgaaatatctgaaacgcttctgcaaaatccataacagtaagaaaacaataaggt |
459 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||| ||||||||| | ||||||| ||||| ||||||| |
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|
| T |
2163440 |
cttgtcaaaaggattggctagctcatctccaagtttttgacctatgtgaaatatctgaaatgcttcggcaaaatccttgacagtaacaaaactataaggt |
2163539 |
T |
|
| Q |
460 |
tcatctttatttgcccaatatt |
481 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
2163540 |
tcatctttatttgcccaatatt |
2163561 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 261 - 412
Target Start/End: Original strand, 2151063 - 2151214
Alignment:
| Q |
261 |
cttcataagcaaaaattctatactagcacaagccttcagaagctcattcttgttaacaccatatttctttgtggtcaagacatttgcatggcatttagat |
360 |
Q |
| |
|
|||||||||||| || ||| | |||||||||||| | || ||||| |||||||||| ||||||||||||||| |||||||||||| ||| ||||||| |
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|
| T |
2151063 |
cttcataagcaataactctctgctagcacaagcccttagcagctccttcttgttaatcccatatttctttgtgatcaagacatttgaatgaaatttagac |
2151162 |
T |
|
| Q |
361 |
ttttcaaaaggattggctagctcatctccaagtttttgatctatgtgaaata |
412 |
Q |
| |
|
|| ||||| |||| ||| ||||| |||||||||| || |||||||||||| |
|
|
| T |
2151163 |
ttgtcaaatggatcggccagctcttctccaagttgtttgcctatgtgaaata |
2151214 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 481 - 522
Target Start/End: Original strand, 2163755 - 2163796
Alignment:
| Q |
481 |
tacattttttcttggaccttgatacacaatttgtccatctgt |
522 |
Q |
| |
|
|||||||| |||||| |||||||||||||||||||||||||| |
|
|
| T |
2163755 |
tacattttctcttggtccttgatacacaatttgtccatctgt |
2163796 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 149; Significance: 2e-78; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 1 - 153
Target Start/End: Complemental strand, 31635551 - 31635399
Alignment:
| Q |
1 |
tgcagaacaccaaatggtgagagtaccctttgtataatgtttcttggttccactttatataagcctttaataaagcttaaaaatacattcacaagatatg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
31635551 |
tgcagaacaccaaatggtgagagtacccttggtataatgtttcttggttccactttatataagcctttaataaagcttaaaaatacattcacaagatatg |
31635452 |
T |
|
| Q |
101 |
cataatattgatcaagagtggaggctttgtttatcaagaaactgacataatag |
153 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31635451 |
cataatattgatcaagagtggaggctttgtttatcaagaaactgacataatag |
31635399 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 2 - 145
Target Start/End: Complemental strand, 35681661 - 35681518
Alignment:
| Q |
2 |
gcagaacaccaaatggtgagagtaccctttgtataatgtttcttggttccactttatataagcctttaataaagcttaaaaatacattcacaagatatgc |
101 |
Q |
| |
|
||||||||||||||||||||||||||||| || ||| |||||||||| |||||||||||||||||||| |||||||||||||| |||||| || |||||| |
|
|
| T |
35681661 |
gcagaacaccaaatggtgagagtacccttagtctaacgtttcttggtcccactttatataagcctttagtaaagcttaaaaatgcattcataaaatatgc |
35681562 |
T |
|
| Q |
102 |
ataatattgatcaagagtggaggctttgtttatcaagaaactga |
145 |
Q |
| |
|
||||||||||||| ||||||||| |||||||||||||||||||| |
|
|
| T |
35681561 |
ataatattgatcatgagtggaggttttgtttatcaagaaactga |
35681518 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 173 - 209
Target Start/End: Complemental strand, 6960722 - 6960686
Alignment:
| Q |
173 |
ttccatgtttctcatccaccactatttttccatcagt |
209 |
Q |
| |
|
|||||| ||||||||||||||| |||||||||||||| |
|
|
| T |
6960722 |
ttccatatttctcatccaccaccatttttccatcagt |
6960686 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 173 - 209
Target Start/End: Complemental strand, 6968117 - 6968081
Alignment:
| Q |
173 |
ttccatgtttctcatccaccactatttttccatcagt |
209 |
Q |
| |
|
|||||| ||||||||||||||| |||||||||||||| |
|
|
| T |
6968117 |
ttccatatttctcatccaccaccatttttccatcagt |
6968081 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 108; Significance: 5e-54; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 1 - 177
Target Start/End: Complemental strand, 37192762 - 37192582
Alignment:
| Q |
1 |
tgcagaacaccaaatggtgagagtaccctttgta----taatgtttcttggttccactttatataagcctttaataaagcttaaaaatacattcacaaga |
96 |
Q |
| |
|
||||||||| |||||||||||||||||||| || ||| |||||||||| |||||| |||||||||||||||||||||||||||| |||||| |||| |
|
|
| T |
37192762 |
tgcagaacatcaaatggtgagagtacccttagttagtctaacgtttcttggtcccacttcatataagcctttaataaagcttaaaaatgcattcataaga |
37192663 |
T |
|
| Q |
97 |
tatgcataatattgatcaagagtggaggctttgtttatcaagaaactgacataatagcatttcacatagacattacttcca |
177 |
Q |
| |
|
||||||||||||||||||||||| || ||||||||| |||||||||||||||||||| ||| |||| |||||||||||||| |
|
|
| T |
37192662 |
tatgcataatattgatcaagagtagaagctttgtttttcaagaaactgacataataggattgcacagagacattacttcca |
37192582 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 61; Significance: 6e-26; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 173 - 265
Target Start/End: Original strand, 49100155 - 49100247
Alignment:
| Q |
173 |
ttccatgtttctcatccaccactatttttccatcagttgatccattgtcactagctaggactttaatgggcttcacctcaaatttcggcttca |
265 |
Q |
| |
|
|||||| ||||||||||||||| |||||||| ||||||||| || || ||||||||| |||||||||| |||||||||||||||||||||||| |
|
|
| T |
49100155 |
ttccatttttctcatccaccaccatttttccgtcagttgattcaatgccactagctaagactttaatgtgcttcacctcaaatttcggcttca |
49100247 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 173 - 265
Target Start/End: Original strand, 49111971 - 49112063
Alignment:
| Q |
173 |
ttccatgtttctcatccaccactatttttccatcagttgatccattgtcactagctaggactttaatgggcttcacctcaaatttcggcttca |
265 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||| ||| || || ||||||||| ||||||||| |||||||||||||||||||| |||| |
|
|
| T |
49111971 |
ttccatgtttctcatctaccactatttttccatcagtggattcaatgccactagctaagactttaataggcttcacctcaaatttcggattca |
49112063 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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