View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18269_low_6 (Length: 527)
Name: NF18269_low_6
Description: NF18269
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18269_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 295; Significance: 1e-165; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 209 - 511
Target Start/End: Original strand, 51990388 - 51990690
Alignment:
| Q |
209 |
catcataatcaaattaactaactaacttctctattcttccattccattccacatgatttttatttctcaccaccatgcgttcccctcagccacttcacaa |
308 |
Q |
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| T |
51990388 |
catcataatcaaattaactaactaacttctctattcttccattccattccacatgatttttatttctcaccaccatgcgttcccctcagccacttcacaa |
51990487 |
T |
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| Q |
309 |
cggcgtcgccgataacaaccgttcaccttccgcccctcgtttccactccaccgtcgctgaacacaaactccgtcgtttcaattcactcatcctcgtcttc |
408 |
Q |
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| T |
51990488 |
cggcgtcgccgataacaaccgttcaccttctgcccctcgtttccactccaccgtcgctgaacacaaactccgtcgtttcaattcactcatcctcgtcttc |
51990587 |
T |
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| Q |
409 |
cgtctcacctctttttcattctcccttgcttcctctatcttcatgctcaccacttctcgcaccggtgattctcctcgctggtaccatttcgacaccttca |
508 |
Q |
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| T |
51990588 |
cgtctcacctctttttcattctcccttgcttcctctatcttcatgctcgccacttctcgcaccggtgattctcctcgctggtaccatttcgacaccttca |
51990687 |
T |
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| Q |
509 |
ggt |
511 |
Q |
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||| |
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| T |
51990688 |
ggt |
51990690 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 10 - 155
Target Start/End: Original strand, 51990210 - 51990340
Alignment:
| Q |
10 |
acatcatcacacgaaagcaggtgcacgctttactgtctggaacagaacagaacagaacagaacaacttttacccaaaacacattcctttccacgcacctt |
109 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
51990210 |
acatcatcacacgaaagcaggtgcacgctttactgtctggaac---------------agaacaacttttacccaaaacacattcctttccacgcacctt |
51990294 |
T |
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| Q |
110 |
cttcttctttttatctcttacactcagatagatagactcatgataa |
155 |
Q |
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| T |
51990295 |
cttcttctttttatctcttacactcagatagatagactcatgataa |
51990340 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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