View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18270_high_1_N (Length: 375)
Name: NF18270_high_1_N
Description: NF18270
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18270_high_1_N |
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| [»] chr3 (3 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 315; Significance: 1e-177; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 1 - 375
Target Start/End: Complemental strand, 38180987 - 38180612
Alignment:
| Q |
1 |
acggtaggagtggata-aaaaagattctaagaaaaactattaacaaggatcaagagataaatgagttgtnnnnnnncatgcttatagatgagtaccccac |
99 |
Q |
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| T |
38180987 |
acggtaggactggatgtaaaaagattctaagaaaaactattaacaaggatcaagagataaatgagttgtagaaaaacatgcttatggatgagtaccccac |
38180888 |
T |
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| Q |
100 |
agtacttggtcatcccgaacgtcagcatggacaccacttgtataaaaacacttggcttatgctatccatccatatacacgcataaccgttgcatatcaca |
199 |
Q |
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| T |
38180887 |
agaacttggtcatcccgaacgtcagcatggacaccacttgtataaaaacacttagcttatgctatccatccatatacattcataaccgttgcatatcaca |
38180788 |
T |
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| Q |
200 |
cttcctttactctactggttcgtgctattgcattttcacaagccaccactaccatggcgcaaaaccaccacttcctcatcatcacatacccactacacgg |
299 |
Q |
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| T |
38180787 |
cttcctttactctactggttcgtgctattgcattttcacaagccaccactaccatggcgcaaaaccaccacttcctcatcatcacatacccactacacgg |
38180688 |
T |
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| Q |
300 |
tcacataaaccctgctctccaattcgccaagcgtctcatttctttgggcgcacaagtcacttttgctaccactatc |
375 |
Q |
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| T |
38180687 |
tcacataaaccctgctctccaattcgccaaacgtctcatttctttgggcgcacaagtcacttttgctaccactatc |
38180612 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 221 - 375
Target Start/End: Complemental strand, 38185435 - 38185281
Alignment:
| Q |
221 |
gtgctattgcattttcacaagccaccactaccatggcgcaaaaccaccacttcctcatcatcacatacccactacacggtcacataaaccctgctctcca |
320 |
Q |
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| T |
38185435 |
gtgctattgcattttcacaagccaccattaccatggcgcaaaaccaccacttcctcatcatcacatacccactacacggtcacataaaccctgcactcca |
38185336 |
T |
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| Q |
321 |
attcgccaagcgtctcatttctttgggcgcacaagtcacttttgctaccactatc |
375 |
Q |
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| T |
38185335 |
attcgccaagcgtctcatttctttcggcgcacaagtcacttttgctacaactatc |
38185281 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 226 - 375
Target Start/End: Complemental strand, 38170947 - 38170798
Alignment:
| Q |
226 |
attgcattttcacaagccaccactaccatggcgcaaaaccaccacttcctcatcatcacatacccactacacggtcacataaaccctgctctccaattcg |
325 |
Q |
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| T |
38170947 |
attgcattttcacaatccaccactaccatggcgcaaaaccaccacttcctcatcataacatacccactacaaggtcacataaaccctgccctccaattca |
38170848 |
T |
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| Q |
326 |
ccaagcgtctcatttctttgggcgcacaagtcacttttgctaccactatc |
375 |
Q |
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| T |
38170847 |
ccaagcgtctcatttctttgggcgcaaaagtcacttttgctaccactatc |
38170798 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 28 - 66
Target Start/End: Original strand, 17213226 - 17213264
Alignment:
| Q |
28 |
aagaaaaactattaacaaggatcaagagataaatgagtt |
66 |
Q |
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| T |
17213226 |
aagaaaaactattaacaaggatctagagattaatgagtt |
17213264 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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