View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18271_high_12 (Length: 290)

Name: NF18271_high_12
Description: NF18271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18271_high_12
NF18271_high_12
[»] chr5 (2 HSPs)
chr5 (1-288)||(37181349-37181629)
chr5 (31-72)||(16902989-16903030)
[»] chr4 (2 HSPs)
chr4 (28-72)||(12034382-12034426)
chr4 (28-73)||(51151083-51151128)
[»] chr1 (5 HSPs)
chr1 (28-75)||(6541003-6541050)
chr1 (28-75)||(9777167-9777214)
chr1 (28-70)||(16192306-16192348)
chr1 (28-72)||(32669785-32669829)
chr1 (28-72)||(50804266-50804310)
[»] chr7 (5 HSPs)
chr7 (33-75)||(3399876-3399918)
chr7 (28-74)||(23190963-23191009)
chr7 (28-72)||(8062932-8062976)
chr7 (35-75)||(30839970-30840010)
chr7 (35-75)||(39608650-39608690)
[»] chr6 (3 HSPs)
chr6 (28-74)||(25084901-25084947)
chr6 (29-69)||(9307526-9307566)
chr6 (28-72)||(19264783-19264827)
[»] chr8 (1 HSPs)
chr8 (28-72)||(24017899-24017943)
[»] chr3 (1 HSPs)
chr3 (38-74)||(3941886-3941922)
[»] chr2 (1 HSPs)
chr2 (28-72)||(40124264-40124308)


Alignment Details
Target: chr5 (Bit Score: 221; Significance: 1e-121; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 1 - 288
Target Start/End: Original strand, 37181349 - 37181629
Alignment:
Q  1 ttttaaaattctgatatattnnnnnnntattatgactactcgttatacattcaaggactaaaatgactattatccgtgtcgtaaataaacgtgtacgtta 100  Q
    |||||||||| |||||||||       |||||| ||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  37181349 ttttaaaattttgatatattaaaaaaatattattactactcgttacacatttaaggactaaaatgactattatccgtgtcgtaaataaacgtgtacgtta 37181448  T
Q  101 atgtatgagaatgttattaagatagagtgtcggaggagggtcaacaatggaccaagatttgctgggcatgagtggatttatattgcttgtgtggcaaaac 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37181449 atgtatgagaatgttattaagatagagtgtcggaggagggtcaacaatggaccaagatttgctgggcatgagtggatttatattgcttgtgtggcaaaac 37181548  T
Q  201 aagattgggtgtggtgtgtgtcttcatgtccattagacctaaaacgcatatcttttacttttttggggtagtttttcttctctctcga 288  Q
    ||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  37181549 aagattgg-------gtgtgtcttcatgtccattagacctaaaacgcatatcttttacttttttggggtagtttttcttctcactcga 37181629  T

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Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 31 - 72
Target Start/End: Complemental strand, 16903030 - 16902989
Alignment:
Q  31 tatgactactcgttatacattcaaggactaaaatgactatta 72  Q
    ||||||||||||||||||||||| ||||||||||||||||||    
T  16903030 tatgactactcgttatacattcagggactaaaatgactatta 16902989  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 28 - 72
Target Start/End: Complemental strand, 12034426 - 12034382
Alignment:
Q  28 tattatgactactcgttatacattcaaggactaaaatgactatta 72  Q
    |||| ||||||||||||||||||||| |||| |||||||||||||    
T  12034426 tattgtgactactcgttatacattcagggaccaaaatgactatta 12034382  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 73
Target Start/End: Original strand, 51151083 - 51151128
Alignment:
Q  28 tattatgactactcgttatacattcaaggactaaaatgactattat 73  Q
    |||| ||||||||||||| |||||||||||| ||||| ||||||||    
T  51151083 tattgtgactactcgttacacattcaaggaccaaaataactattat 51151128  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000006; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 28 - 75
Target Start/End: Complemental strand, 6541050 - 6541003
Alignment:
Q  28 tattatgactactcgttatacattcaaggactaaaatgactattatcc 75  Q
    ||||||||||| |||||| ||||||| ||| |||||||||||||||||    
T  6541050 tattatgactattcgttacacattcagggattaaaatgactattatcc 6541003  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 28 - 75
Target Start/End: Original strand, 9777167 - 9777214
Alignment:
Q  28 tattatgactactcgttatacattcaaggactaaaatgactattatcc 75  Q
    ||||||||||||| || |||||||||||||  ||||||||||||||||    
T  9777167 tattatgactacttgtaatacattcaaggatcaaaatgactattatcc 9777214  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 28 - 70
Target Start/End: Original strand, 16192306 - 16192348
Alignment:
Q  28 tattatgactactcgttatacattcaaggactaaaatgactat 70  Q
    ||||||||||||| |||| ||||||||| ||||||||||||||    
T  16192306 tattatgactacttgttacacattcaagtactaaaatgactat 16192348  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 28 - 72
Target Start/End: Complemental strand, 32669829 - 32669785
Alignment:
Q  28 tattatgactactcgttatacattcaaggactaaaatgactatta 72  Q
    |||| ||||||||||||| ||||||| |||| |||||||||||||    
T  32669829 tattgtgactactcgttacacattcatggaccaaaatgactatta 32669785  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 28 - 72
Target Start/End: Complemental strand, 50804310 - 50804266
Alignment:
Q  28 tattatgactactcgttatacattcaaggactaaaatgactatta 72  Q
    |||| |||| |||||||| |||||||||||||||||| |||||||    
T  50804310 tattgtgaccactcgttacacattcaaggactaaaataactatta 50804266  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 33 - 75
Target Start/End: Complemental strand, 3399918 - 3399876
Alignment:
Q  33 tgactactcgttatacattcaaggactaaaatgactattatcc 75  Q
    |||||| | |||| |||||||||||||||||||||||||||||    
T  3399918 tgactaattgttaaacattcaaggactaaaatgactattatcc 3399876  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 28 - 74
Target Start/End: Complemental strand, 23191009 - 23190963
Alignment:
Q  28 tattatgactactcgttatacattcaaggactaaaatgactattatc 74  Q
    ||||||||||||||||||||||||||  ||  |||||||||||||||    
T  23191009 tattatgactactcgttatacattcagagataaaaatgactattatc 23190963  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 28 - 72
Target Start/End: Original strand, 8062932 - 8062976
Alignment:
Q  28 tattatgactactcgttatacattcaaggactaaaatgactatta 72  Q
    |||| ||||||||||||| |||||||||||| ||||| |||||||    
T  8062932 tattgtgactactcgttacacattcaaggaccaaaataactatta 8062976  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 35 - 75
Target Start/End: Original strand, 30839970 - 30840010
Alignment:
Q  35 actactcgttatacattcaaggactaaaatgactattatcc 75  Q
    |||| |||||||||||||| |||| ||||||||||||||||    
T  30839970 actattcgttatacattcagggaccaaaatgactattatcc 30840010  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 35 - 75
Target Start/End: Original strand, 39608650 - 39608690
Alignment:
Q  35 actactcgttatacattcaaggactaaaatgactattatcc 75  Q
    ||||||| ||| |||||||||||||||||||| ||||||||    
T  39608650 actactccttacacattcaaggactaaaatgattattatcc 39608690  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 28 - 74
Target Start/End: Complemental strand, 25084947 - 25084901
Alignment:
Q  28 tattatgactactcgttatacattcaaggactaaaatgactattatc 74  Q
    |||||| |||||||||||||||| ||||||| ||||| |||||||||    
T  25084947 tattataactactcgttatacatccaaggaccaaaataactattatc 25084901  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 29 - 69
Target Start/End: Original strand, 9307526 - 9307566
Alignment:
Q  29 attatgactactcgttatacattcaaggactaaaatgacta 69  Q
    ||||| ||||||||||| ||||||| |||||||||||||||    
T  9307526 attataactactcgttacacattcagggactaaaatgacta 9307566  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 28 - 72
Target Start/End: Original strand, 19264783 - 19264827
Alignment:
Q  28 tattatgactactcgttatacattcaaggactaaaatgactatta 72  Q
    |||| ||||||||||||| ||||||||||||  ||||||||||||    
T  19264783 tattgtgactactcgttacacattcaaggacgtaaatgactatta 19264827  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 28 - 72
Target Start/End: Complemental strand, 24017943 - 24017899
Alignment:
Q  28 tattatgactactcgttatacattcaaggactaaaatgactatta 72  Q
    ||||||| |||||||||| |||||||| |||| ||||||||||||    
T  24017943 tattatgtctactcgttacacattcaatgactgaaatgactatta 24017899  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 38 - 74
Target Start/End: Original strand, 3941886 - 3941922
Alignment:
Q  38 actcgttatacattcaaggactaaaatgactattatc 74  Q
    |||| |||||||||||||||| |||||||||||||||    
T  3941886 actccttatacattcaaggaccaaaatgactattatc 3941922  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 28 - 72
Target Start/End: Complemental strand, 40124308 - 40124264
Alignment:
Q  28 tattatgactactcgttatacattcaaggactaaaatgactatta 72  Q
    |||| ||||||||||||| |||||||||||| ||| |||||||||    
T  40124308 tattgtgactactcgttacacattcaaggaccaaagtgactatta 40124264  T

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