View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18271_high_2 (Length: 603)

Name: NF18271_high_2
Description: NF18271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18271_high_2
NF18271_high_2
[»] chr2 (4 HSPs)
chr2 (164-593)||(43468721-43469163)
chr2 (139-198)||(38879516-38879575)
chr2 (54-119)||(43469180-43469251)
chr2 (139-198)||(11028778-11028837)
[»] chr8 (3 HSPs)
chr8 (140-198)||(36132675-36132733)
chr8 (139-197)||(42056680-42056738)
chr8 (139-209)||(40719945-40720017)
[»] chr1 (4 HSPs)
chr1 (139-198)||(39744218-39744277)
chr1 (139-198)||(21356793-21356852)
chr1 (139-198)||(24241477-24241536)
chr1 (136-201)||(29189737-29189802)
[»] chr7 (1 HSPs)
chr7 (140-198)||(30783533-30783589)
[»] chr5 (2 HSPs)
chr5 (140-198)||(20524654-20524712)
chr5 (140-198)||(8026466-8026526)
[»] chr4 (1 HSPs)
chr4 (140-202)||(39503556-39503620)


Alignment Details
Target: chr2 (Bit Score: 339; Significance: 0; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 164 - 593
Target Start/End: Complemental strand, 43469163 - 43468721
Alignment:
Q  164 attattaatttagttttgtgactatagaagaatacttcatttccatctaagctgccgcaatacgaaacacggccattatttccaaattcaaatttgacgt 263  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||    
T  43469163 attattaatttagttttgtgactgtagaagaatacttcatttccatctaagctgccgcaatacgaaacatagccattatttccaaattcaaatttgacgt 43469064  T
Q  264 atgattatcttgattttggagtaattgaggttccaggcaactaatttgatcgatttattatgttttttgagacaatgatttcttaagttttttaaaacca 363  Q
    |||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43469063 atgattattttgattttggaataattgaggttccaggcaactaatttgatcgatttattatgttttttgagacaatgatttcttaagttttttaaaacca 43468964  T
Q  364 tcataagttctgttta----------------agaatggtggttatcgaaatgagtcaatcttacaagactaaacattattttaaatgggtcttgatttt 447  Q
    ||||||||||||||||                  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43468963 tcataagttctgtttatattcatttatataattcaatggtggttatcgaaatgagtcaatcttacaagactaaacattattttaaatgggtcttgatttt 43468864  T
Q  448 ttaatagtataacacttgataatgtttatttgcttgatacggatcctttttcttttatcctatcttataaaacttttttgatggcttaatttaccaccat 547  Q
    ||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||   |||||    
T  43468863 ttaattgtataacacttgataatgtttatttgcttgatacggaccctttttcttttatcctatcttataaaacttttttgacggcttaattt---accat 43468767  T
Q  548 aaggcttactttactataagattttaaaataactaagagccctatg 593  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  43468766 aaggcttactttactataagattttaaaataactaagagccctatg 43468721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 139 - 198
Target Start/End: Complemental strand, 38879575 - 38879516
Alignment:
Q  139 aatctttttatgtgtgtgcccaaacattattaatttagttttgtgactatagaagaatac 198  Q
    |||||||||||||||||| ||||||||||||||||| || |||||||||| |||||||||    
T  38879575 aatctttttatgtgtgtgtccaaacattattaatttggtcttgtgactatggaagaatac 38879516  T

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Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 54 - 119
Target Start/End: Complemental strand, 43469251 - 43469180
Alignment:
Q  54 cacttctatttgtttactcaaaccaatacagct------attagtgttcatttcgaggatgaaagttataag 119  Q
    ||||||||||||||||||||| ||||||||| |      |||||||||||||||||||||||||||||||||    
T  43469251 cacttctatttgtttactcaatccaatacagttgcacaaattagtgttcatttcgaggatgaaagttataag 43469180  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 139 - 198
Target Start/End: Complemental strand, 11028837 - 11028778
Alignment:
Q  139 aatctttttatgtgtgtgcccaaacattattaatttagttttgtgactatagaagaatac 198  Q
    |||||||||||||||||| |||||||||||| |||| || || |||| || |||||||||    
T  11028837 aatctttttatgtgtgtgtccaaacattattgatttggtcttttgacgatggaagaatac 11028778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 140 - 198
Target Start/End: Complemental strand, 36132733 - 36132675
Alignment:
Q  140 atctttttatgtgtgtgcccaaacattattaatttagttttgtgactatagaagaatac 198  Q
    ||||||||||||||||  ||||| | |||||||||||| ||||||||||||||||||||    
T  36132733 atctttttatgtgtgtatccaaatactattaatttagtcttgtgactatagaagaatac 36132675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 139 - 197
Target Start/End: Complemental strand, 42056738 - 42056680
Alignment:
Q  139 aatctttttatgtgtgtgcccaaacattattaatttagttttgtgactatagaagaata 197  Q
    ||||||||||||| |||| |||||||||||| |||| || ||||||| || ||||||||    
T  42056738 aatctttttatgtttgtgtccaaacattattgatttggtcttgtgaccatggaagaata 42056680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 139 - 209
Target Start/End: Original strand, 40719945 - 40720017
Alignment:
Q  139 aatctttttatgtgtgtgc--ccaaacattattaatttagttttgtgactatagaagaatacttcatttccat 209  Q
    ||||||||||||||||||   |||||||||||||||||| | || |||| || ||||||||| |||| |||||    
T  40719945 aatctttttatgtgtgtgtgtccaaacattattaatttaatcttttgaccatggaagaatacctcatgtccat 40720017  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000006; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 139 - 198
Target Start/End: Original strand, 39744218 - 39744277
Alignment:
Q  139 aatctttttatgtgtgtgcccaaacattattaatttagttttgtgactatagaagaatac 198  Q
    ||||||||||| |||||| |||||||||||| |||| || ||||||| ||||||||||||    
T  39744218 aatctttttatatgtgtgtccaaacattattgatttggtcttgtgaccatagaagaatac 39744277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 139 - 198
Target Start/End: Complemental strand, 21356852 - 21356793
Alignment:
Q  139 aatctttttatgtgtgtgcccaaacattattaatttagttttgtgactatagaagaatac 198  Q
    ||||||||||| |||||| |||||||||||| |||| || ||||||| ||| ||||||||    
T  21356852 aatctttttatatgtgtgtccaaacattattgatttggtcttgtgaccataaaagaatac 21356793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 139 - 198
Target Start/End: Complemental strand, 24241536 - 24241477
Alignment:
Q  139 aatctttttatgtgtgtgcccaaacattattaatttagttttgtgactatagaagaatac 198  Q
    |||||||||||||||||| |||||||||||| |||| ||  |||||| || |||||||||    
T  24241536 aatctttttatgtgtgtgtccaaacattattgatttggtcatgtgaccatggaagaatac 24241477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 136 - 201
Target Start/End: Original strand, 29189737 - 29189802
Alignment:
Q  136 gacaatctttttatgtgtgtgcccaaacattattaatttagttttgtgactatagaagaatacttc 201  Q
    |||||| | |||||| ||||| ||||||| |||| ||||||| ||||||  |||||||||||||||    
T  29189737 gacaatttctttatgcgtgtgtccaaacactatttatttagtcttgtgatcatagaagaatacttc 29189802  T

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Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 140 - 198
Target Start/End: Original strand, 30783533 - 30783589
Alignment:
Q  140 atctttttatgtgtgtgcccaaacattattaatttagttttgtgactatagaagaatac 198  Q
    ||||||||||||||||  ||||||| |||||||||||| || |||| ||||||||||||    
T  30783533 atctttttatgtgtgt--ccaaacactattaatttagtcttctgaccatagaagaatac 30783589  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 140 - 198
Target Start/End: Original strand, 20524654 - 20524712
Alignment:
Q  140 atctttttatgtgtgtgcccaaacattattaatttagttttgtgactatagaagaatac 198  Q
    ||||||| ||||||||| ||||||| |||| ||||||||||||||  || |||||||||    
T  20524654 atcttttgatgtgtgtgtccaaacagtattgatttagttttgtgatcatggaagaatac 20524712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 140 - 198
Target Start/End: Complemental strand, 8026526 - 8026466
Alignment:
Q  140 atctttttatgtgtgtgc--ccaaacattattaatttagttttgtgactatagaagaatac 198  Q
    |||||||||||||| |||  ||||||| |||| |||| || ||||||||||||||||||||    
T  8026526 atctttttatgtgtatgcgtccaaacagtattgatttggtcttgtgactatagaagaatac 8026466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 140 - 202
Target Start/End: Original strand, 39503556 - 39503620
Alignment:
Q  140 atctttttatgtgt--gtgcccaaacattattaatttagttttgtgactatagaagaatacttca 202  Q
    ||||||||||||||  |||  |||||| |||| ||||||| ||||||| ||||||||||||||||    
T  39503556 atctttttatgtgtatgtgttcaaacactattgatttagtcttgtgaccatagaagaatacttca 39503620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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