View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18271_high_3 (Length: 596)

Name: NF18271_high_3
Description: NF18271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18271_high_3
NF18271_high_3
[»] chr5 (7 HSPs)
chr5 (186-564)||(37180766-37181144)
chr5 (1-183)||(37181172-37181369)
chr5 (24-93)||(39194875-39194944)
chr5 (68-124)||(7314003-7314059)
chr5 (207-246)||(13200588-13200627)
chr5 (32-90)||(22579334-22579392)
chr5 (209-246)||(31949317-31949354)
[»] chr4 (12 HSPs)
chr4 (34-128)||(8170888-8170982)
chr4 (9-111)||(8755908-8756011)
chr4 (6-121)||(13834383-13834499)
chr4 (65-129)||(5979484-5979548)
chr4 (27-122)||(30315824-30315919)
chr4 (207-278)||(35255498-35255569)
chr4 (46-121)||(38932751-38932826)
chr4 (207-246)||(46805051-46805090)
chr4 (65-111)||(4161827-4161873)
chr4 (64-125)||(48973333-48973394)
chr4 (206-278)||(17381284-17381356)
chr4 (8-83)||(35075679-35075755)
[»] chr6 (9 HSPs)
chr6 (191-278)||(25084903-25084991)
chr6 (63-128)||(3711307-3711372)
chr6 (32-92)||(10219620-10219680)
chr6 (6-93)||(33551047-33551135)
chr6 (32-96)||(34937512-34937576)
chr6 (46-92)||(12278223-12278269)
chr6 (1-93)||(25085047-25085140)
chr6 (207-247)||(6524875-6524915)
chr6 (207-247)||(21237188-21237228)
[»] chr2 (8 HSPs)
chr2 (32-128)||(12676464-12676560)
chr2 (32-92)||(23359427-23359487)
chr2 (48-84)||(28834721-28834757)
chr2 (191-251)||(6686763-6686824)
chr2 (206-271)||(7165570-7165635)
chr2 (32-124)||(21603494-21603586)
chr2 (207-251)||(29926673-29926717)
chr2 (36-128)||(33260998-33261090)
[»] chr1 (9 HSPs)
chr1 (64-128)||(34826989-34827053)
chr1 (65-128)||(6541120-6541183)
chr1 (191-248)||(43054879-43054936)
chr1 (65-131)||(5043419-5043485)
chr1 (62-93)||(12238434-12238465)
chr1 (2-85)||(43054832-43054914)
chr1 (64-108)||(10018817-10018861)
chr1 (6-85)||(32743300-32743380)
chr1 (64-128)||(36144977-36145041)
[»] scaffold0687 (1 HSPs)
scaffold0687 (6-93)||(1633-1721)
[»] chr8 (12 HSPs)
chr8 (6-93)||(7603949-7604037)
chr8 (64-128)||(16338261-16338325)
chr8 (32-128)||(21145452-21145548)
chr8 (6-124)||(3662372-3662491)
chr8 (65-129)||(24018015-24018079)
chr8 (207-278)||(4586750-4586821)
chr8 (207-246)||(14532454-14532493)
chr8 (46-121)||(33590208-33590283)
chr8 (191-247)||(42660087-42660144)
chr8 (24-92)||(1249240-1249308)
chr8 (64-128)||(17488120-17488184)
chr8 (9-128)||(34281393-34281513)
[»] scaffold0045 (1 HSPs)
scaffold0045 (207-278)||(20839-20910)
[»] chr7 (9 HSPs)
chr7 (34-111)||(25993873-25993950)
chr7 (207-278)||(8062905-8062976)
chr7 (39-93)||(5198045-5198099)
chr7 (27-129)||(10228778-10228880)
chr7 (6-93)||(18942793-18942882)
chr7 (64-126)||(29778712-29778774)
chr7 (36-93)||(34703715-34703772)
chr7 (207-278)||(1247497-1247569)
chr7 (6-93)||(19303521-19303609)
[»] chr3 (9 HSPs)
chr3 (73-128)||(23195649-23195704)
chr3 (32-126)||(34979105-34979199)
chr3 (32-91)||(48048014-48048073)
chr3 (32-111)||(53705896-53705975)
chr3 (64-126)||(24255317-24255379)
chr3 (32-93)||(14984489-14984550)
chr3 (64-128)||(30843654-30843718)
chr3 (27-71)||(38989875-38989919)
chr3 (65-129)||(46008641-46008705)


Alignment Details
Target: chr5 (Bit Score: 354; Significance: 0; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 186 - 564
Target Start/End: Complemental strand, 37181144 - 37180766
Alignment:
Q  186 cagattgcacaattaaagactttttaaaattttaatatattaagagactattatgactacttgctacgcatccaggcaccaaaataactattagtcaaat 285  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  37181144 cagattgcacaattaaagactttttaaaattttaatatattaagagactattatgactacttgctacgcatccaggcaccaaaataactattggtcaaat 37181045  T
Q  286 atgtgaatagatnnnnnnntgtcatgcttttgaattacgttcaaccttatgaaacgttcattgcaaaataacttcaacatgaaaaatctatatgtgtgaa 385  Q
    ||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37181044 atgtgaatagataaaaaaatgtcatgcttttgaattacgttcaaccttatgaaacgttcattgcaaaataacttcaacatgaaaaatctatatgtgtgaa 37180945  T
Q  386 caatttttggtaaatacataggacaatctagatggcggctcctcggaacatttgtaaaatgtttataaattagtaccactttatattaaatgatatcatc 485  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37180944 caatttttggtaaatacataggacaatctagatggcggctcctcggaacatttgtaaaatgtttataaattagtaccactttatattaaatgatatcatc 37180845  T
Q  486 tccttttaaaaaactctccaaatttttggtaccaacttatagaacaataactaaattttgatttcaaggtaccctgcaa 564  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37180844 tccttttaaaaaactctccaaatttttggtaccaacttatagaacaataactaaattttgatttcaaggtaccctgcaa 37180766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 1 - 183
Target Start/End: Complemental strand, 37181369 - 37181172
Alignment:
Q  1 taatatatcaaaattttaaaacatcattgactgtgcacttcgttggtcaaaataatctctagcgttaaaatgtttcgttaatattgtcatattggttcat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37181369 taatatatcaaaattttaaaacatcattgactgtgcacttcgttggtcaaaataatctctagcgttaaaatgtttcgttaatattgtcatattggttcat 37181270  T
Q  101 taatatacttaataattgtcatatcagttttatcagt---------------tatcaatccctatatgaaaaggttttagtgaacattgatggattat 183  Q
    ||||||||||| ||||||||||||||||||| | |||               ||||||||||||||||||||||||||||||||||||||||||||||    
T  37181269 taatatacttactaattgtcatatcagttttgtaagtactcacgtactatcatatcaatccctatatgaaaaggttttagtgaacattgatggattat 37181172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 24 - 93
Target Start/End: Original strand, 39194875 - 39194944
Alignment:
Q  24 tcattgactgtgcacttcgttggtcaaaataatctctagcgttaaaatgtttcgttaatattgtcatatt 93  Q
    ||||||| ||||||||| ||| ||||||||| || ||  | |||||||||||||||||||||||||||||    
T  39194875 tcattgattgtgcactttgttagtcaaaatagtcactgccattaaaatgtttcgttaatattgtcatatt 39194944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 68 - 124
Target Start/End: Original strand, 7314003 - 7314059
Alignment:
Q  68 aaatgtttcgttaatattgtcatattggttcattaatatacttaataattgtcatat 124  Q
    |||| |||||||||||||||||||||||| | |||||||||||| | ||||||||||    
T  7314003 aaatatttcgttaatattgtcatattggtcccttaatatacttatttattgtcatat 7314059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 207 - 246
Target Start/End: Complemental strand, 13200627 - 13200588
Alignment:
Q  207 ttttaaaattttaatatattaagagactattatgactact 246  Q
    |||||||||||  |||||||||||||||||||||||||||    
T  13200627 ttttaaaatttagatatattaagagactattatgactact 13200588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 32 - 90
Target Start/End: Original strand, 22579334 - 22579392
Alignment:
Q  32 tgtgcacttcgttggtcaaaataatctctagcgttaaaatgtttcgttaatattgtcat 90  Q
    ||||||||||||| ||| ||||| ||||||  |||| ||| ||||||||||||||||||    
T  22579334 tgtgcacttcgttagtcgaaatagtctctaatgttagaatatttcgttaatattgtcat 22579392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 209 - 246
Target Start/End: Original strand, 31949317 - 31949354
Alignment:
Q  209 ttaaaattttaatatattaagagactattatgactact 246  Q
    ||||||||||||||||||||||||||||| ||| ||||    
T  31949317 ttaaaattttaatatattaagagactattgtgattact 31949354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 2e-17; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 34 - 128
Target Start/End: Complemental strand, 8170982 - 8170888
Alignment:
Q  34 tgcacttcgttggtcaaaataatctctagcgttaaaatgtttcgttaatattgtcatattggttcattaatatacttaataattgtcatatcagt 128  Q
    |||| |||||| ||||||||||||||||   |||||||||||| |||||||||||||||| || | | |||||||||| | ||||||||||||||    
T  8170982 tgcaattcgttagtcaaaataatctctaatattaaaatgtttcattaatattgtcatattagtacttcaatatacttacttattgtcatatcagt 8170888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 9 - 111
Target Start/End: Complemental strand, 8756011 - 8755908
Alignment:
Q  9 caaaattttaaaaca-tcattgactgtgcacttcgttggtcaaaataatctctagcgttaaaatgtttcgttaatattgtcatattggttcattaatata 107  Q
    ||||||||||||| | ||||||| | |||||||||||  |||||||| |||||| | |||||||  ||||||||||||||||||||  | | ||||||||    
T  8756011 caaaattttaaaataatcattgattatgcacttcgttaatcaaaatagtctctaacattaaaatacttcgttaatattgtcatattaatcctttaatata 8755912  T
Q  108 ctta 111  Q
    ||||    
T  8755911 ctta 8755908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 6 - 121
Target Start/End: Original strand, 13834383 - 13834499
Alignment:
Q  6 tatcaaaattttaaaaca-tcattgactgtgcacttcgttggtcaaaataatctctagcgttaaaatgtttcgttaatattgtcatattggttcattaat 104  Q
    |||||||||||||||| | || |||| ||||||||| ||| ||||||||| ||| || | |||||||  || ||||||||||||||||| || | | |||    
T  13834383 tatcaaaattttaaaatagtccttgattgtgcactttgttagtcaaaatagtctttaacattaaaataatttgttaatattgtcatattagtccttcaat 13834482  T
Q  105 atacttaataattgtca 121  Q
    ||||||| | |||||||    
T  13834483 atacttacttattgtca 13834499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 65 - 129
Target Start/End: Complemental strand, 5979548 - 5979484
Alignment:
Q  65 ttaaaatgtttcgttaatattgtcatattggttcattaatatacttaataattgtcatatcagtt 129  Q
    ||||| ||||||||||||||||||||||| ||||  ||||||||| |   |||||||||||||||    
T  5979548 ttaaattgtttcgttaatattgtcatattagttccctaatatactaatgtattgtcatatcagtt 5979484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 27 - 122
Target Start/End: Complemental strand, 30315919 - 30315824
Alignment:
Q  27 ttgactgtgcacttcgttggtcaaaataatctctagcgttaaaatgtttcgttaatattgtcatattggttcattaatatacttaataattgtcat 122  Q
    |||| ||||||||||||| ||||||||| | | || || |||||||  ||||||||||||||||||| || | ||||| || ||| | ||||||||    
T  30315919 ttgattgtgcacttcgttagtcaaaatattatttaacgctaaaatgcatcgttaatattgtcatattagtcctttaatgtatttatttattgtcat 30315824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 207 - 278
Target Start/End: Original strand, 35255498 - 35255569
Alignment:
Q  207 ttttaaaattttaatatattaagagactattatgactacttgctacgcatccaggcaccaaaataactatta 278  Q
    |||||||||||||||| ||| |||||||||| |||||||| | |||  ||  ||| ||||||||||||||||    
T  35255498 ttttaaaattttaatacattgagagactattgtgactactcgttacatatttagggaccaaaataactatta 35255569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 46 - 121
Target Start/End: Complemental strand, 38932826 - 38932751
Alignment:
Q  46 gtcaaaataatctctagcgttaaaatgtttcgttaatattgtcatattggttcattaatatacttaataattgtca 121  Q
    ||||||||| |||||| | ||||||| |||| |||||||||||||||| || | | |||||||||| | |||||||    
T  38932826 gtcaaaatagtctctaacattaaaatatttcattaatattgtcatattagtccttcaatatacttatttattgtca 38932751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 207 - 246
Target Start/End: Original strand, 46805051 - 46805090
Alignment:
Q  207 ttttaaaattttaatatattaagagactattatgactact 246  Q
    |||||||||||||||||||| | |||||||||||||||||    
T  46805051 ttttaaaattttaatatattgaaagactattatgactact 46805090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 65 - 111
Target Start/End: Complemental strand, 4161873 - 4161827
Alignment:
Q  65 ttaaaatgtttcgttaatattgtcatattggttcattaatatactta 111  Q
    |||||||||||| |||||||||||||||| |||| | ||||||||||    
T  4161873 ttaaaatgtttcattaatattgtcatattagttcttcaatatactta 4161827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 64 - 125
Target Start/End: Complemental strand, 48973394 - 48973333
Alignment:
Q  64 gttaaaatgtttcgttaatattgtcatattggttcattaatatacttaataattgtcatatc 125  Q
    ||||||||| ||| |||||||||||||||| || | | |||||||||| | |||||||||||    
T  48973394 gttaaaatgcttcattaatattgtcatattagtccttcaatatacttacttattgtcatatc 48973333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 206 - 278
Target Start/End: Complemental strand, 17381356 - 17381284
Alignment:
Q  206 tttttaaaattttaatatattaagagactattatgactacttgctacgcatccaggcaccaaaataactatta 278  Q
    ||||| ||||||| ||| ||| |  ||||||| |||||||||||||| ||| |||| |||||||| |||||||    
T  17381356 tttttgaaattttgatacattgaaggactattgtgactacttgctacacattcaggaaccaaaatgactatta 17381284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 8 - 83
Target Start/End: Original strand, 35075679 - 35075755
Alignment:
Q  8 tcaaaattttaaaaca-tcattgactgtgcacttcgttggtcaaaataatctctagcgttaaaatgtttcgttaata 83  Q
    |||||||||||||| | |||| |||||| ||||| ||| ||||||||| |||||  ||||||||||||  |||||||    
T  35075679 tcaaaattttaaaatagtcatcgactgtacactttgttcgtcaaaatagtctcttccgttaaaatgttctgttaata 35075755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 191 - 278
Target Start/End: Complemental strand, 25084991 - 25084903
Alignment:
Q  191 tgcacaattaaagactttttaaaa-ttttaatatattaagagactattatgactacttgctacgcatccaggcaccaaaataactatta 278  Q
    |||| ||||||||||| ||||||| |||||||| |||||||||||||||| |||||| | ||  |||||| | ||||||||||||||||    
T  25084991 tgcaaaattaaagactatttaaaaattttaatacattaagagactattataactactcgttatacatccaaggaccaaaataactatta 25084903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 63 - 128
Target Start/End: Original strand, 3711307 - 3711372
Alignment:
Q  63 cgttaaaatgtttcgttaatattgtcatattggttcattaatatacttaataattgtcatatcagt 128  Q
    ||||||||||||||||||||||||||||||| |||| | |||||| ||| | | ||| ||||||||    
T  3711307 cgttaaaatgtttcgttaatattgtcatattagttcctcaatatatttatttaatgttatatcagt 3711372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 32 - 92
Target Start/End: Original strand, 10219620 - 10219680
Alignment:
Q  32 tgtgcacttcgttggtcaaaataatctctagcgttaaaatgtttcgttaatattgtcatat 92  Q
    ||||||||| ||| ||||||||| |||||  |||||||||  |||||||||||||||||||    
T  10219620 tgtgcactttgttagtcaaaatagtctctgacgttaaaataattcgttaatattgtcatat 10219680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 6 - 93
Target Start/End: Complemental strand, 33551135 - 33551047
Alignment:
Q  6 tatcaaaattttaaaacatcat-tgactgtgcacttcgttggtcaaaataatctctagcgttaaaatgtttcgttaatattgtcatatt 93  Q
    |||||||||||||||| || || ||| |||||| |||||| ||||||||||| |||   ||| ||||||||| |||||||| |||||||    
T  33551135 tatcaaaattttaaaatattatctgattgtgcatttcgttagtcaaaataatttctgatgttgaaatgtttctttaatattatcatatt 33551047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 32 - 96
Target Start/End: Original strand, 34937512 - 34937576
Alignment:
Q  32 tgtgcacttcgttggtcaaaataatctctagcgttaaaatgtttcgttaatattgtcatattggt 96  Q
    ||||||||  ||| ||||||||||| |||  |||||||||||||| |||||||| ||||||||||    
T  34937512 tgtgcactaagttagtcaaaataatatcttacgttaaaatgtttcattaatattttcatattggt 34937576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 46 - 92
Target Start/End: Complemental strand, 12278269 - 12278223
Alignment:
Q  46 gtcaaaataatctctagcgttaaaatgtttcgttaatattgtcatat 92  Q
    ||||||||  |||||  ||||||||||||||||||||||||||||||    
T  12278269 gtcaaaattgtctcttacgttaaaatgtttcgttaatattgtcatat 12278223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 25085140 - 25085047
Alignment:
Q  1 taatatatcaaaattttaaaaca-tcattgactgtgcacttcgttggtcaaaataatctctagcgttaaaatgtttcgttaatattgtcatatt 93  Q
    |||| |||||||||||||||| | |  |||| ||||||||| ||| ||||||||| ||| || | |||||||  || |||||||||||||||||    
T  25085140 taatgtatcaaaattttaaaatactttttgattgtgcactttgttagtcaaaatagtctttaacattaaaataatttgttaatattgtcatatt 25085047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 207 - 247
Target Start/End: Complemental strand, 6524915 - 6524875
Alignment:
Q  207 ttttaaaattttaatatattaagagactattatgactactt 247  Q
    ||||| |||||||||| ||| ||||||||||||||||||||    
T  6524915 ttttagaattttaatacattgagagactattatgactactt 6524875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 207 - 247
Target Start/End: Complemental strand, 21237228 - 21237188
Alignment:
Q  207 ttttaaaattttaatatattaagagactattatgactactt 247  Q
    ||||| |||||||||| ||| ||||||||||||||||||||    
T  21237228 ttttagaattttaatacattgagagactattatgactactt 21237188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 32 - 128
Target Start/End: Original strand, 12676464 - 12676560
Alignment:
Q  32 tgtgcacttcgttggtcaaaataatctctagcgttaaaatgtttcgttaatattgtcatattggttcattaatatacttaataattgtcatatcagt 128  Q
    ||||||||| ||| ||||||||||| |||  |||||||||||||  |||||||||||||||| || | | ||||||||||   ||||||||||||||    
T  12676464 tgtgcacttagttagtcaaaataatttctgacgttaaaatgttttattaatattgtcatattagtccctcaatatacttatctattgtcatatcagt 12676560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 32 - 92
Target Start/End: Original strand, 23359427 - 23359487
Alignment:
Q  32 tgtgcacttcgttggtcaaaataatctctagcgttaaaatgtttcgttaatattgtcatat 92  Q
    |||| ||| |||| ||||||||| |||||| ||||||||||||| |||| |||||||||||    
T  23359427 tgtgtactacgttagtcaaaatagtctctaacgttaaaatgttttgttactattgtcatat 23359487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 48 - 84
Target Start/End: Original strand, 28834721 - 28834757
Alignment:
Q  48 caaaataatctctagcgttaaaatgtttcgttaatat 84  Q
    ||||||||||||| |||||||||||||||||||||||    
T  28834721 caaaataatctctcgcgttaaaatgtttcgttaatat 28834757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 191 - 251
Target Start/End: Complemental strand, 6686824 - 6686763
Alignment:
Q  191 tgcacaattaaagact-ttttaaaattttaatatattaagagactattatgactacttgcta 251  Q
    |||||||| ||| ||| |||||||||||| ||||||| ||| |||||| |||||||||||||    
T  6686824 tgcacaatcaaaaactattttaaaattttgatatattgagaaactattttgactacttgcta 6686763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 206 - 271
Target Start/End: Complemental strand, 7165635 - 7165570
Alignment:
Q  206 tttttaaaattttaatatattaagagactattatgactacttgctacgcatccaggcaccaaaata 271  Q
    ||||||||| ||||||| |||||||||||||||||  ||||  |||| ||| |||| |||||||||    
T  7165635 tttttaaaaatttaatacattaagagactattatggttactccctacacattcagggaccaaaata 7165570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 32 - 124
Target Start/End: Original strand, 21603494 - 21603586
Alignment:
Q  32 tgtgcacttcgttggtcaaaataatctctagcgttaaaatgtttcgttaatattgtcatattggttcattaatatacttaataattgtcatat 124  Q
    ||||||||| ||| ||||||||| ||| |    ||||||| |||||||||||||||||| || |||| | |||| ||||| | ||||||||||    
T  21603494 tgtgcactttgttagtcaaaatagtctttgatattaaaatatttcgttaatattgtcatgttagttcttcaatagacttagttattgtcatat 21603586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 207 - 251
Target Start/End: Complemental strand, 29926717 - 29926673
Alignment:
Q  207 ttttaaaattttaatatattaagagactattatgactacttgcta 251  Q
    |||||||||||  ||||||||||| |||||| |||||||||||||    
T  29926717 ttttaaaatttggatatattaagaaactattgtgactacttgcta 29926673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 36 - 128
Target Start/End: Original strand, 33260998 - 33261090
Alignment:
Q  36 cacttcgttggtcaaaataatctctagcgttaaaatgtttcgttaatattgtcatattggttcattaatatacttaataattgtcatatcagt 128  Q
    ||||||||| ||||||||| ||| |  |  |||||| ||||||| |||||||||||||  ||| | |||||||||| | || |||||||||||    
T  33260998 cacttcgttagtcaaaatagtctttgacagtaaaatatttcgttgatattgtcatattatttcttcaatatacttattcatagtcatatcagt 33261090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000004; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 64 - 128
Target Start/End: Complemental strand, 34827053 - 34826989
Alignment:
Q  64 gttaaaatgtttcgttaatattgtcatattggttcatt-aatatacttaataattgtcatatcagt 128  Q
    |||||||||||||||||||||||||||||| | ||||| |||||||||| | ||||||||||||||    
T  34827053 gttaaaatgtttcgttaatattgtcatattag-tcattcaatatacttatttattgtcatatcagt 34826989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 65 - 128
Target Start/End: Original strand, 6541120 - 6541183
Alignment:
Q  65 ttaaaatgtttcgttaatattgtcatattggttcattaatatacttaataattgtcatatcagt 128  Q
    ||||||| ||||||||||||||||||||| || | | |||||||||| | ||||||||||||||    
T  6541120 ttaaaatatttcgttaatattgtcatattagtccttcaatatacttacttattgtcatatcagt 6541183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 191 - 248
Target Start/End: Original strand, 43054879 - 43054936
Alignment:
Q  191 tgcacaattaaagactttttaaaattttaatatattaagagactattatgactacttg 248  Q
    |||| ||| ||||||||||||||||||||||||||| |  ||||||| ||||||||||    
T  43054879 tgcaaaatcaaagactttttaaaattttaatatattgatcgactattgtgactacttg 43054936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 65 - 131
Target Start/End: Complemental strand, 5043485 - 5043419
Alignment:
Q  65 ttaaaatgtttcgttaatattgtcatattggttcatt-aatatacttaataattgtcatatcagtttt 131  Q
    ||||||| ||| ||||||||||| |||||||| |||| |||||||||| | |||||||||||||||||    
T  5043485 ttaaaatattttgttaatattgttatattggt-cattcaatatacttatttattgtcatatcagtttt 5043419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 62 - 93
Target Start/End: Original strand, 12238434 - 12238465
Alignment:
Q  62 gcgttaaaatgtttcgttaatattgtcatatt 93  Q
    ||||||||||||||||||||||||||||||||    
T  12238434 gcgttaaaatgtttcgttaatattgtcatatt 12238465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 2 - 85
Target Start/End: Complemental strand, 43054914 - 43054832
Alignment:
Q  2 aatatatcaaaattttaaaacatcattgactgtgcacttcgttggtcaaaataatctctagcgttaaaatgtttcgttaatatt 85  Q
    ||||||| ||||||||||||  || |||| | |||||| ||||||||||||||| ||||  || |||||| |||||||||||||    
T  43054914 aatatattaaaattttaaaaagtctttgattttgcactacgttggtcaaaataa-ctcttacgataaaatatttcgttaatatt 43054832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 64 - 108
Target Start/End: Original strand, 10018817 - 10018861
Alignment:
Q  64 gttaaaatgtttcgttaatattgtcatattggttcattaatatac 108  Q
    ||||||||||||||||||||||||||| || |||| | |||||||    
T  10018817 gttaaaatgtttcgttaatattgtcatgttagttcctcaatatac 10018861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 6 - 85
Target Start/End: Complemental strand, 32743380 - 32743300
Alignment:
Q  6 tatcaaaattttaaaaca-tcattgactgtgcacttcgttggtcaaaataatctctagcgttaaaatgtttcgttaatatt 85  Q
    |||||||||||||||| | || |||| ||| || |||||| |||||||||||||||  | ||||||| ||||| |||||||    
T  32743380 tatcaaaattttaaaataatctttgattgtacatttcgttagtcaaaataatctctgacattaaaatatttcgctaatatt 32743300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 64 - 128
Target Start/End: Complemental strand, 36145041 - 36144977
Alignment:
Q  64 gttaaaatgtttcgttaatattgtcatattggttcattaatatacttaataattgtcatatcagt 128  Q
    |||||||| |||  |||||||||||||||| |||  | |||||||||| | ||||||||||||||    
T  36145041 gttaaaatcttttattaatattgtcatattagtttttcaatatacttagttattgtcatatcagt 36144977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0687 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0687
Description:

Target: scaffold0687; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 6 - 93
Target Start/End: Original strand, 1633 - 1721
Alignment:
Q  6 tatcaaaattttaaaaca-tcattgactgtgcacttcgttggtcaaaataatctctagcgttaaaatgtttcgttaatattgtcatatt 93  Q
    |||||||||||||||| | |  |||| ||||||||||||||||||||||| ||||||   || |||||| || ||||||||||||||||    
T  1633 tatcaaaattttaaaataatttttgattgtgcacttcgttggtcaaaatagtctctaatattgaaatgtctcattaatattgtcatatt 1721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 6 - 93
Target Start/End: Original strand, 7603949 - 7604037
Alignment:
Q  6 tatcaaaattttaaaaca-tcattgactgtgcacttcgttggtcaaaataatctctagcgttaaaatgtttcgttaatattgtcatatt 93  Q
    |||||||||||||||| | |  |||| ||||||||||||||||||||||| ||||||   || |||||| || ||||||||||||||||    
T  7603949 tatcaaaattttaaaataatttttgattgtgcacttcgttggtcaaaatagtctctaatattgaaatgtctcattaatattgtcatatt 7604037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 64 - 128
Target Start/End: Complemental strand, 16338325 - 16338261
Alignment:
Q  64 gttaaaatgtttcgttaatattgtcatattggttcattaatatacttaataattgtcatatcagt 128  Q
    ||||||||| || ||||||||||||||||| || ||| |||||||||| | ||||||||||||||    
T  16338325 gttaaaatgctttgttaatattgtcatatttgtccatcaatatacttacttattgtcatatcagt 16338261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 32 - 128
Target Start/End: Original strand, 21145452 - 21145548
Alignment:
Q  32 tgtgcacttcgttggtcaaaataatctctagcgttaaaatgtttcgttaatattgtcatattggttcattaatatacttaataattgtcatatcagt 128  Q
    ||||||||  ||| ||||||||| |||||  ||||||||||||||||||||||| ||||||| ||   | |||||||||| | | ||||||||||||    
T  21145452 tgtgcactatgttagtcaaaatagtctcttacgttaaaatgtttcgttaatattatcatattagtctctcaatatacttacttactgtcatatcagt 21145548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 6 - 124
Target Start/End: Original strand, 3662372 - 3662491
Alignment:
Q  6 tatcaaaattttaaaaca-tcattgactgtgcacttcgttggtcaaaataatctctagcgttaaaatgtttcgttaatattgtcatattggttcattaat 104  Q
    |||||||||||||||| | |  |||| ||||||| | | | |||||| || || ||||| |||||||  || ||||||||||||||||| |||| |||||    
T  3662372 tatcaaaattttaaaatagttcttgattgtgcacattgcttgtcaaattagtccctagcattaaaataatttgttaatattgtcatattagttctttaat 3662471  T
Q  105 atacttaataattgtcatat 124  Q
    ||||||| | ||||||||||    
T  3662472 atacttacttattgtcatat 3662491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 65 - 129
Target Start/End: Original strand, 24018015 - 24018079
Alignment:
Q  65 ttaaaatgtttcgttaatattgtcatattggttcatt-aatatacttaataattgtcatatcagtt 129  Q
    ||||||| ||||||||||||||||||||| | ||||| ||||||| || |||||||||||||||||    
T  24018015 ttaaaatatttcgttaatattgtcatattag-tcattcaatatacatactaattgtcatatcagtt 24018079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 207 - 278
Target Start/End: Complemental strand, 4586821 - 4586750
Alignment:
Q  207 ttttaaaattttaatatattaagagactattatgactacttgctacgcatccaggcaccaaaataactatta 278  Q
    |||||||||||||||| |||||||||||||| | |||||| | ||| ||| || | | ||||||||||||||    
T  4586821 ttttaaaattttaatacattaagagactattgtaactactcgttacacattcaaggatcaaaataactatta 4586750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 207 - 246
Target Start/End: Original strand, 14532454 - 14532493
Alignment:
Q  207 ttttaaaattttaatatattaagagactattatgactact 246  Q
    |||||||||||| |||||||||||||||||| ||||||||    
T  14532454 ttttaaaattttgatatattaagagactattgtgactact 14532493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 46 - 121
Target Start/End: Complemental strand, 33590283 - 33590208
Alignment:
Q  46 gtcaaaataatctctagcgttaaaatgtttcgttaatattgtcatattggttcattaatatacttaataattgtca 121  Q
    |||||||||||| ||| | |||||||  ||||||||||||||||||| | ||| | |||||| ||||| |||||||    
T  33590283 gtcaaaataatccctaacattaaaatacttcgttaatattgtcatatcgattcttcaatataattaattattgtca 33590208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 191 - 247
Target Start/End: Original strand, 42660087 - 42660144
Alignment:
Q  191 tgcacaattaaagact-ttttaaaattttaatatattaagagactattatgactactt 247  Q
    |||| ||| ||||||| ||||||||| |||||| |||||||||||||| |||||||||    
T  42660087 tgcataatcaaagactattttaaaatcttaatacattaagagactattctgactactt 42660144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 24 - 92
Target Start/End: Complemental strand, 1249308 - 1249240
Alignment:
Q  24 tcattgactgtgcacttcgttggtcaaaataatctctagcgttaaaatgtttcgttaatattgtcatat 92  Q
    ||||||| ||| || |||||| ||||||||||||| || | ||||||| ||| ||||||| ||||||||    
T  1249308 tcattgattgtacatttcgttagtcaaaataatctataacattaaaatattttgttaatactgtcatat 1249240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 64 - 128
Target Start/End: Complemental strand, 17488184 - 17488120
Alignment:
Q  64 gttaaaatgtttcgttaatattgtcatattggttcattaatatacttaataattgtcatatcagt 128  Q
    ||||||||||||||||||||| |||||||| || | | |||||||||| | |||  |||||||||    
T  17488184 gttaaaatgtttcgttaatatcgtcatattagtccctcaatatacttacttattaccatatcagt 17488120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 9 - 128
Target Start/End: Original strand, 34281393 - 34281513
Alignment:
Q  9 caaaattttaaaaca-tcattgactgtgcacttcgttggtcaaaataatctctagcgttaaaatgtttcgttaatattgtcatattggttcattaatata 107  Q
    ||||||||||||| | || |||| | ||||||  ||| |||||||||||||||  || |||||||| | | ||||||||||||||| || |||  |||||    
T  34281393 caaaattttaaaatagtccttgattatgcactatgttagtcaaaataatctcttacgctaaaatgtcttgctaatattgtcatattagtccatcgatata 34281492  T
Q  108 cttaataattgtcatatcagt 128  Q
    ||||   ||| ||||||||||    
T  34281493 cttatctattatcatatcagt 34281513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 207 - 278
Target Start/End: Original strand, 20839 - 20910
Alignment:
Q  207 ttttaaaattttaatatattaagagactattatgactacttgctacgcatccaggcaccaaaataactatta 278  Q
    |||||||||||| ||||||| |  ||||||| |||||||||||||| ||| |||| |||||| |||||||||    
T  20839 ttttaaaattttgatatattgaaggactattttgactacttgctacacattcagggaccaaattaactatta 20910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000009; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 34 - 111
Target Start/End: Original strand, 25993873 - 25993950
Alignment:
Q  34 tgcacttcgttggtcaaaataatctctagcgttaaaatgtttcgttaatattgtcatattggttcattaatatactta 111  Q
    |||||| |||| | ||||||||||||||  | |||||||||||||||| ||||||||||| |||   |||||||||||    
T  25993873 tgcactacgtttgacaaaataatctctaatgctaaaatgtttcgttaacattgtcatattagtttcgtaatatactta 25993950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 207 - 278
Target Start/End: Original strand, 8062905 - 8062976
Alignment:
Q  207 ttttaaaattttaatatattaagagactattatgactacttgctacgcatccaggcaccaaaataactatta 278  Q
    |||||||||||||||| ||| | |||||||| |||||||| | ||| ||| || | ||||||||||||||||    
T  8062905 ttttaaaattttaatacattgacagactattgtgactactcgttacacattcaaggaccaaaataactatta 8062976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 39 - 93
Target Start/End: Complemental strand, 5198099 - 5198045
Alignment:
Q  39 ttcgttggtcaaaataatctctagcgttaaaatgtttcgttaatattgtcatatt 93  Q
    |||||| |||||||||||||||| | |||||||  ||| ||||||||||||||||    
T  5198099 ttcgttagtcaaaataatctctaacattaaaatacttcattaatattgtcatatt 5198045  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 27 - 129
Target Start/End: Original strand, 10228778 - 10228880
Alignment:
Q  27 ttgactgtgcacttcgttggtcaaaataatctctagcgttaaaatgtttcgttaatattgtcatattggttcattaatatacttaataattgtcatatca 126  Q
    |||| |||||| |||||| ||||||||| ||| |  | ||||||||||| ||||| |||  |||||| || | | |||||||||||| |||||||||| |    
T  10228778 ttgattgtgcaattcgttagtcaaaatagtctttgaccttaaaatgttttgttaaaatttacatattagtccttcaatatacttaattattgtcatataa 10228877  T
Q  127 gtt 129  Q
    |||    
T  10228878 gtt 10228880  T

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Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 6 - 93
Target Start/End: Original strand, 18942793 - 18942882
Alignment:
Q  6 tatcaaaattttaaaacatcattgac--tgtgcacttcgttggtcaaaataatctctagcgttaaaatgtttcgttaatattgtcatatt 93  Q
    |||||||||||||||| ||| ||||   |||||| |||||| ||| ||||| |||||| | |||||||   |||||||||||||||||||    
T  18942793 tatcaaaattttaaaatatctttgatcatgtgcatttcgttagtccaaatagtctctaacattaaaatacgtcgttaatattgtcatatt 18942882  T

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Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 64 - 126
Target Start/End: Original strand, 29778712 - 29778774
Alignment:
Q  64 gttaaaatgtttcgttaatattgtcatattggttcattaatatacttaataattgtcatatca 126  Q
    |||||||||||||||||||||||||||||| || | | || ||| ||| | ||||||||||||    
T  29778712 gttaaaatgtttcgttaatattgtcatattagtccgtcaacatatttattcattgtcatatca 29778774  T

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Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 36 - 93
Target Start/End: Original strand, 34703715 - 34703772
Alignment:
Q  36 cacttcgttggtcaaaataatctctagcgttaaaatgtttcgttaatattgtcatatt 93  Q
    |||||||||| |||||||| |||||| | ||||||| ||| || ||||||||||||||    
T  34703715 cacttcgttgatcaaaatagtctctaactttaaaatattttgtcaatattgtcatatt 34703772  T

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Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 207 - 278
Target Start/End: Complemental strand, 1247569 - 1247497
Alignment:
Q  207 ttttaaaattttaatatattaagagactattatgactacttgctacgcatccaggcacc-aaaataactatta 278  Q
    |||||||||||||||| ||||||| |||||| |||||||| | |||  || |||| ||| |||||||||||||    
T  1247569 ttttaaaattttaatacattaagaaactattgtgactactcgttacatattcagggaccaaaaataactatta 1247497  T

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Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 6 - 93
Target Start/End: Complemental strand, 19303609 - 19303521
Alignment:
Q  6 tatcaaaattttaaaaca-tcattgactgtgcacttcgttggtcaaaataatctctagcgttaaaatgtttcgttaatattgtcatatt 93  Q
    |||||||||||||||| | ||||||| | |  |||||||| ||||||||||||  || | ||| ||| ||| |||||||||||||||||    
T  19303609 tatcaaaattttaaaatactcattgattattaacttcgttagtcaaaataatcattaacattagaatattttgttaatattgtcatatt 19303521  T

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Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 73 - 128
Target Start/End: Complemental strand, 23195704 - 23195649
Alignment:
Q  73 tttcgttaatattgtcatattggttcattaatatacttaataattgtcatatcagt 128  Q
    ||||||||||||||||||||| ||   | |||||||||||| ||||||||||||||    
T  23195704 tttcgttaatattgtcatattagtctttcaatatacttaattattgtcatatcagt 23195649  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 32 - 126
Target Start/End: Complemental strand, 34979199 - 34979105
Alignment:
Q  32 tgtgcacttcgttggtcaaaataatctctagcgttaaaatgtttcgttaatattgtcatattggttcatt-aatatacttaataattgtcatatca 126  Q
    |||||| || ||| ||||||||| |||||  | ||||||| ||||||||||||| ||||||| | ||||| |||||||||| | ||||||||||||    
T  34979199 tgtgcattttgttagtcaaaatagtctctcacattaaaatatttcgttaatattatcatattag-tcattcaatatacttacttattgtcatatca 34979105  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 32 - 91
Target Start/End: Complemental strand, 48048073 - 48048014
Alignment:
Q  32 tgtgcacttcgttggtcaaaataatctctagcgttaaaatgtttcgttaatattgtcata 91  Q
    |||||| |||||| ||||||||| || || |||||||||||||| ||||||| |||||||    
T  48048073 tgtgcatttcgtttgtcaaaatagtccctcgcgttaaaatgttttgttaatactgtcata 48048014  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 32 - 111
Target Start/End: Complemental strand, 53705975 - 53705896
Alignment:
Q  32 tgtgcacttcgttggtcaaaataatctctagcgttaaaatgtttcgttaatattgtcatattggttcattaatatactta 111  Q
    ||||||||| ||  ||||||||||||||| || |||||||  || ||||||||||||||||| |||  | ||||||||||    
T  53705975 tgtgcactttgtcagtcaaaataatctctcgcattaaaatactttgttaatattgtcatattagttattcaatatactta 53705896  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 64 - 126
Target Start/End: Original strand, 24255317 - 24255379
Alignment:
Q  64 gttaaaatgtttcgttaatattgtcatattggttcattaatatacttaataattgtcatatca 126  Q
    |||||||||| | ||||||||| ||||||| |||||| ||||| |||| | ||||||||||||    
T  24255317 gttaaaatgtcttgttaatattatcatattagttcatcaatatgcttatttattgtcatatca 24255379  T

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Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 32 - 93
Target Start/End: Original strand, 14984489 - 14984550
Alignment:
Q  32 tgtgcacttcgttggtcaaaataatctctagcgttaaaatgtttcgttaatattgtcatatt 93  Q
    ||||||||||||| ||||||||| |  ||  | ||||||| |||||||||||||||||||||    
T  14984489 tgtgcacttcgttagtcaaaatagttcctgacattaaaatatttcgttaatattgtcatatt 14984550  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 64 - 128
Target Start/End: Original strand, 30843654 - 30843718
Alignment:
Q  64 gttaaaatgtttcgttaatattgtcatattggttcattaatatacttaataattgtcatatcagt 128  Q
    ||||||||| ||| |||||||||||||||| ||   | |||||||||| | ||||||||||||||    
T  30843654 gttaaaatgcttcattaatattgtcatattagtctttcaatatacttatttattgtcatatcagt 30843718  T

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Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 27 - 71
Target Start/End: Complemental strand, 38989919 - 38989875
Alignment:
Q  27 ttgactgtgcacttcgttggtcaaaataatctctagcgttaaaat 71  Q
    |||| ||||||||||||||||||||||| |||||  |||||||||    
T  38989919 ttgattgtgcacttcgttggtcaaaatagtctctgacgttaaaat 38989875  T

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Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 65 - 129
Target Start/End: Original strand, 46008641 - 46008705
Alignment:
Q  65 ttaaaatgtttcgttaatattgtcatattggttcattaatatacttaataattgtcatatcagtt 129  Q
    |||||||  ||||||||||||||||||||  |   |||||||||||| | |||||||||||||||    
T  46008641 ttaaaataattcgttaatattgtcatattaatcttttaatatacttatttattgtcatatcagtt 46008705  T

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