View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18271_low_10 (Length: 354)
Name: NF18271_low_10
Description: NF18271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18271_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 255; Significance: 1e-142; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 72 - 342
Target Start/End: Original strand, 30293911 - 30294181
Alignment:
| Q |
72 |
agtgaacattattatatttatatagttcgatcacagaactctgatacatagcatgatcgacagtgttataaccccacactacatggaggacatcaacttt |
171 |
Q |
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| T |
30293911 |
agtgaacattattatatttctatagttcagtcacagaactctgatacatagcatgatcgacagtgttataaccccacactacatggaggacatcaacttt |
30294010 |
T |
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| Q |
172 |
tcaatgaaggagcttggttcagaaagagaggaggactccatcatcttttacatgcaaaagatatatccaggttgttacaaataagaattttcttatatgt |
271 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30294011 |
tcaatgaaggagcttggttccgaaagagaggaggactccatcatcttttacatgcaaaagatatatccaggttgttacaaataagaattttcttatatgt |
30294110 |
T |
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| Q |
272 |
aacataaaacattctatttgaactcgtctcatagcttgtcgtataaatttaaatagatgaatggaaaaact |
342 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30294111 |
aacataaaacattctatttgaactcgtctcatagcttgtcgtataaatttaaatagatgaatggaaaaact |
30294181 |
T |
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