View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18271_low_11 (Length: 310)
Name: NF18271_low_11
Description: NF18271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18271_low_11 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 254; Significance: 1e-141; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 8 - 269
Target Start/End: Complemental strand, 33021284 - 33021023
Alignment:
| Q |
8 |
cgaagaatatataaaatcttacgttacttgatagtaaaaacacaatcaaatcaagaggctcttatagataaattttctttctttatttgtgtattctttg |
107 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33021284 |
cgaacaatatataaaatcttacgttacttgatagtaaaaacacaatcaaatcaagaggctcttatagataaattttctttctttatttgtgtattctttg |
33021185 |
T |
|
| Q |
108 |
aatgacaacaagagactctgacataatacatgaaattatgtagaaacagaaggcaatcatataacaacaagaggctcttaataatcatcaattaagagag |
207 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33021184 |
aatgacaacaagaggctctgacataatacatgaaattatgtagaaacagaaggcaatcatataacaacaagaggctcttaataatcatcaattaagagag |
33021085 |
T |
|
| Q |
208 |
gtttccgagatccacaatttaccttgtcatcacattattccacatgtcgtaaccacgatgaa |
269 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33021084 |
gtttccgagatccacaatttaccttgtcatcacattattccacatgtcgtaaccacgatgaa |
33021023 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 15 - 269
Target Start/End: Complemental strand, 33039183 - 33038929
Alignment:
| Q |
15 |
tatataaaatcttacgttacttgatagtaaaaacacaatcaaatcaagaggctcttatagataaattttctttctttatttgtgtattctttgaatgaca |
114 |
Q |
| |
|
|||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||| |
|
|
| T |
33039183 |
tatacaaaatcttaggttacttgatagtaaaaacacaatcaaatcaagaggctcttatagataaattttctttctttacttgtgttttctttgaatgaca |
33039084 |
T |
|
| Q |
115 |
acaagagactctgacataatacatgaaattatgtagaaacagaaggcaatcatataacaacaagaggctcttaataatcatcaattaagagaggtttccg |
214 |
Q |
| |
|
||||||| |||| |||||||||||| ||||||||| |||||||||| |||||||| ||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
33039083 |
acaagaggctctaacataatacatgcaattatgtacaaacagaaggaaatcatatgacaacaagaggctcttaataatcatcaattaagcgaggtttcca |
33038984 |
T |
|
| Q |
215 |
agatccacaatttaccttg-tcatcacattattccacatgtcgtaaccacgatgaa |
269 |
Q |
| |
|
||| ||| || |||||||| | ||||| ||||||||||||||||||||||||||| |
|
|
| T |
33038983 |
agaaccataacttaccttgttggtcaca-tattccacatgtcgtaaccacgatgaa |
33038929 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 13 - 126
Target Start/End: Complemental strand, 33027546 - 33027433
Alignment:
| Q |
13 |
aatatataaaatcttacgttacttgatagtaaaaacacaatcaaatcaagaggctcttatagataaattttctttctttatttgtgtattctttgaatga |
112 |
Q |
| |
|
|||||| | ||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||| |
|
|
| T |
33027546 |
aatatacagaatcttaggttacttgatagtaaaagcacaatcaaatcaagaggctcttatagataaattttctttatttgcttgtgtattctttgaatga |
33027447 |
T |
|
| Q |
113 |
caacaagagactct |
126 |
Q |
| |
|
|||||||| |||| |
|
|
| T |
33027446 |
taacaagaggctct |
33027433 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 173 - 263
Target Start/End: Complemental strand, 33027445 - 33027356
Alignment:
| Q |
173 |
aacaagaggctcttaataatcatcaattaagagaggtttccgagatccacaatttaccttgtcatcacattattccacatgtcgtaaccac |
263 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||| |||||| ||||| |||| ||||||||| |
|
|
| T |
33027445 |
aacaagaggctcttaataatcattaattaagagaggtttccgagatccataatttaccttgttatcaca-tattcttcatgccgtaaccac |
33027356 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University