View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18271_low_13 (Length: 293)
Name: NF18271_low_13
Description: NF18271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18271_low_13 |
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| [»] scaffold0246 (1 HSPs) |
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Alignment Details
Target: scaffold0246 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: scaffold0246
Description:
Target: scaffold0246; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 1 - 272
Target Start/End: Complemental strand, 18756 - 18485
Alignment:
| Q |
1 |
tgcatgagtgttgttggggtgtgtctcttgacataatatgggtcccacacacacagtagagagtgtaaattcacatgaatatctttcaataatcaagtgt |
100 |
Q |
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| T |
18756 |
tgcatgagtgttattggggtgtgtctcttgacataatatgagtcccacacacacattagagagtgtaaattcacatgaatatctttcaataatcaagtgt |
18657 |
T |
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| Q |
101 |
tttgaagagaattaatgtttctgaagtgtaagtgttcgacgtatagcatgacgtttattttttaattgtagcttaattggaagcttaaactctttgttaa |
200 |
Q |
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| T |
18656 |
tttgaagagaattaatgtgtctgaagtgtaagtgttcgacgtatagcatgaagtttattttttaattgtagcttaattggaagcttaaactctttgttaa |
18557 |
T |
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| Q |
201 |
gtttgtttataatgaattatgacctataaagcctgatacttgatatgatacgaatataatgtggcaccaatg |
272 |
Q |
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| T |
18556 |
gtttgtttataatgaattatgacctataaagcctgatatttgatacgatacgaatataacgtggcaccaatg |
18485 |
T |
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Target: chr4 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 1 - 272
Target Start/End: Complemental strand, 40480817 - 40480546
Alignment:
| Q |
1 |
tgcatgagtgttgttggggtgtgtctcttgacataatatgggtcccacacacacagtagagagtgtaaattcacatgaatatctttcaataatcaagtgt |
100 |
Q |
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|||||||||||| ||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40480817 |
tgcatgagtgttattggggtgtgtctcttgacataatatgagtcccacacacacattagagagtgtaaattcacatgaatatctttcaataatcaagtgt |
40480718 |
T |
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| Q |
101 |
tttgaagagaattaatgtttctgaagtgtaagtgttcgacgtatagcatgacgtttattttttaattgtagcttaattggaagcttaaactctttgttaa |
200 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40480717 |
tttgaagagaattaatgtgtctgaagtgtaagtgttcgacgtatagcatgaagtttattttttaattgtagcttaattggaagcttaaactctttgttaa |
40480618 |
T |
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| Q |
201 |
gtttgtttataatgaattatgacctataaagcctgatacttgatatgatacgaatataatgtggcaccaatg |
272 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||| |||||||||||| |
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| T |
40480617 |
gtttgtttataatgaattatgacctataaagcctgatatttgatacgatacgaatataacgtggcaccaatg |
40480546 |
T |
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