View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18271_low_15 (Length: 283)
Name: NF18271_low_15
Description: NF18271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18271_low_15 |
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Alignment Details
Target: chr2 (Bit Score: 153; Significance: 4e-81; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 12 - 213
Target Start/End: Original strand, 2496188 - 2496411
Alignment:
| Q |
12 |
agagaagaggaagaacaaaataaaatgccttacaaatcttgaacatttatcagttggtcaaataatgacattacttataattattaatgctatattttat |
111 |
Q |
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| T |
2496188 |
agagaagaggaagaacaaaataaaatgccttacaaatcttgaacatttatcagttggtcaaataatgacattacttataattattaatgctatattttat |
2496287 |
T |
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| Q |
112 |
gtacaaagtcaagggtgatgaccaaatgatatgtacaataa----------------------ttattgtttagataagtcagagaatttttcaatctat |
189 |
Q |
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| T |
2496288 |
gtacaaagtcaagggtgatgaccaaatgatatgtacaataattattgtttacgagtatctttcttattgtttagataagtcagagaatttttcaatctat |
2496387 |
T |
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| Q |
190 |
cgtgttaaaaagacttagatctca |
213 |
Q |
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|||||||||||||||||||||||| |
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| T |
2496388 |
cgtgttaaaaagacttagatctca |
2496411 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 211 - 265
Target Start/End: Original strand, 2496747 - 2496801
Alignment:
| Q |
211 |
tcaaatgagtgagaagaagaagatatatgatgcaccaatatatctggcttacttg |
265 |
Q |
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| T |
2496747 |
tcaaatgagtcagaagaagaagatatatgatgcaccaatatatctggcttacttg |
2496801 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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