View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18271_low_4 (Length: 524)

Name: NF18271_low_4
Description: NF18271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18271_low_4
NF18271_low_4
[»] chr4 (7 HSPs)
chr4 (56-505)||(51686843-51687290)
chr4 (1-55)||(6034173-6034226)
chr4 (1-55)||(48182967-48183020)
chr4 (1-57)||(41236476-41236531)
chr4 (3-42)||(40574910-40574949)
chr4 (1-58)||(24995022-24995078)
chr4 (7-55)||(53352492-53352539)
[»] chr7 (8 HSPs)
chr7 (1-57)||(4999430-4999485)
chr7 (1-57)||(8080299-8080354)
chr7 (1-56)||(19329971-19330025)
chr7 (2-57)||(32951409-32951463)
chr7 (1-56)||(40957836-40957890)
chr7 (2-56)||(36362144-36362197)
chr7 (1-42)||(19436117-19436158)
chr7 (9-57)||(36361841-36361888)
[»] chr2 (7 HSPs)
chr2 (1-55)||(32505566-32505619)
chr2 (1-55)||(10249300-10249353)
chr2 (1-57)||(40701607-40701662)
chr2 (1-56)||(19930737-19930791)
chr2 (1-42)||(33436030-33436071)
chr2 (1-57)||(4060814-4060869)
chr2 (2-58)||(27864821-27864876)
[»] chr6 (3 HSPs)
chr6 (1-56)||(11427747-11427801)
chr6 (1-56)||(17598683-17598737)
chr6 (1-56)||(29857956-29858010)
[»] chr1 (6 HSPs)
chr1 (1-56)||(9474793-9474847)
chr1 (1-55)||(41758934-41758987)
chr1 (1-57)||(27564651-27564706)
chr1 (1-55)||(47452238-47452291)
chr1 (1-55)||(48716200-48716253)
chr1 (1-54)||(37649327-37649379)
[»] chr8 (6 HSPs)
chr8 (1-55)||(504039-504092)
chr8 (1-55)||(12831176-12831229)
chr8 (1-55)||(15197462-15197515)
chr8 (1-55)||(23122515-23122568)
chr8 (1-56)||(34012213-34012267)
chr8 (1-55)||(44507006-44507058)
[»] chr5 (4 HSPs)
chr5 (1-55)||(35785328-35785381)
chr5 (1-56)||(18520801-18520855)
chr5 (1-56)||(33149555-33149609)
chr5 (1-42)||(35943822-35943863)
[»] chr3 (5 HSPs)
chr3 (2-42)||(30801663-30801703)
chr3 (1-56)||(11095284-11095338)
chr3 (1-56)||(54868812-54868866)
chr3 (2-54)||(27714822-27714873)
chr3 (2-42)||(35965712-35965752)
[»] scaffold0237 (1 HSPs)
scaffold0237 (1-56)||(4158-4212)


Alignment Details
Target: chr4 (Bit Score: 423; Significance: 0; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 423; E-Value: 0
Query Start/End: Original strand, 56 - 505
Target Start/End: Original strand, 51686843 - 51687290
Alignment:
Q  56 taaatagaaagaagcgggtcccaacccacaaggccccctcctacatcattttgccttggtgtgaccatttcacccttctcccaccctttatatacgaagc 155  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  51686843 taaatagaaagaagcgggtcccaacccacaaggccccctcctacaacattttgccttggtgtgaccatttcacccttctcccaccctttatatacaaagc 51686942  T
Q  156 ttcctccctcgtccctctcccacaccccatatctctctaactctccattttcagtcttaataatactaataactaaccaaacatattttcattgcatttg 255  Q
    |||||||||||||||||||||||  ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  51686943 ttcctccctcgtccctctcccac--cccatatctctctaactctccattttcagtcttgataatactaataactaaccaaacatattttcattgcatttg 51687040  T
Q  256 tattactacaaaccaaacatggcaaaaggtggaaagctaatgaagctaaaatcagcactcaaaaaatggaactcatttggaaacggaaaacagagccgtc 355  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51687041 tattactacaaaccaaacatggcaaaaggtggaaagctaatgaagctaaaatcagcactcaaaaaatggaactcatttggaaacggaaaacagagccgtc 51687140  T
Q  356 acagcatcagcgccgtcgccgacgaagactcatcgtcttcaagatccgacctccacaccgtcttcgtaggaaaatctcgccgcctctaccgtgtcacctc 455  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  51687141 acagcatcagcgccgtcgccgacgaagactcatcgtcttcaagatccgacctccacaccgtcttcgtaggaaagtctcgccgcctctaccgtgtcacctc 51687240  T
Q  456 cgacgttgttgacaaccctgtcttccgtgaactcgttgaaaggtcccgtg 505  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51687241 cgacgttgttgacaaccctgtcttccgtgaactcgttgaaaggtcccgtg 51687290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 6034173 - 6034226
Alignment:
Q  1 gcatggggtgtacaagggtgtatgacaataaaaagtgtctattgtatcattactc 55  Q
    ||||||||||||||||||||||||| ||||||| ||||||| |||||||||||||    
T  6034173 gcatggggtgtacaagggtgtatgagaataaaaggtgtcta-tgtatcattactc 6034226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 48183020 - 48182967
Alignment:
Q  1 gcatggggtgtacaagggtgtatgacaataaaaagtgtctattgtatcattactc 55  Q
    ||||||||||||||||||||||||| ||||||  ||||||| |||||||||||||    
T  48183020 gcatggggtgtacaagggtgtatgagaataaagggtgtcta-tgtatcattactc 48182967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 41236476 - 41236531
Alignment:
Q  1 gcatggggtgtacaagggtgtatgacaataaaaagtgtctattgtatcattactcta 57  Q
    ||||||||||||||||||||||||  ||||||  ||||||| |||||||||||||||    
T  41236476 gcatggggtgtacaagggtgtatgggaataaagggtgtcta-tgtatcattactcta 41236531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 3 - 42
Target Start/End: Original strand, 40574910 - 40574949
Alignment:
Q  3 atggggtgtacaagggtgtatgacaataaaaagtgtctat 42  Q
    ||||||||||||||||||||||| ||||||| ||||||||    
T  40574910 atggggtgtacaagggtgtatgagaataaaaggtgtctat 40574949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 24995078 - 24995022
Alignment:
Q  1 gcatggggtgtacaagggtgtatgacaataaaaagtgtctattgtatcattactctaa 58  Q
    ||||||||||||||| ||||||||  ||||||  ||||||| ||||||||||||||||    
T  24995078 gcatggggtgtacaatggtgtatgggaataaagggtgtcta-tgtatcattactctaa 24995022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 7 - 55
Target Start/End: Complemental strand, 53352539 - 53352492
Alignment:
Q  7 ggtgtacaagggtgtatgacaataaaaagtgtctattgtatcattactc 55  Q
    ||||||||||||||||||| ||||||  ||||||| |||||||||||||    
T  53352539 ggtgtacaagggtgtatgaaaataaagggtgtcta-tgtatcattactc 53352492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 4999485 - 4999430
Alignment:
Q  1 gcatggggtgtacaagggtgtatgacaataaaaagtgtctattgtatcattactcta 57  Q
    ||||||||||||||||||||||||| ||||||| ||||||| |||||||||||||||    
T  4999485 gcatggggtgtacaagggtgtatgagaataaaaggtgtcta-tgtatcattactcta 4999430  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 8080354 - 8080299
Alignment:
Q  1 gcatggggtgtacaagggtgtatgacaataaaaagtgtctattgtatcattactcta 57  Q
    ||||||||||||||||||||||||  ||||||  ||||||| |||||||||||||||    
T  8080354 gcatggggtgtacaagggtgtatgggaataaagggtgtcta-tgtatcattactcta 8080299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 19329971 - 19330025
Alignment:
Q  1 gcatggggtgtacaagggtgtatgacaataaaaagtgtctattgtatcattactct 56  Q
    ||||||||||||||||||||||||  ||||||  ||||||| ||||||||||||||    
T  19329971 gcatggggtgtacaagggtgtatgggaataaagggtgtcta-tgtatcattactct 19330025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 2 - 57
Target Start/End: Complemental strand, 32951463 - 32951409
Alignment:
Q  2 catggggtgtacaagggtgtatgacaataaaaagtgtctattgtatcattactcta 57  Q
    |||||||||||||||||||||||| |||||   ||||||| |||||||||||||||    
T  32951463 catggggtgtacaagggtgtatgagaataaggggtgtcta-tgtatcattactcta 32951409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 40957836 - 40957890
Alignment:
Q  1 gcatggggtgtacaagggtgtatgacaataaaaagtgtctattgtatcattactct 56  Q
    ||||||||||||||||||||||||| |||||   ||||||| ||||||||||||||    
T  40957836 gcatggggtgtacaagggtgtatgaaaataatgggtgtcta-tgtatcattactct 40957890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 2 - 56
Target Start/End: Original strand, 36362144 - 36362197
Alignment:
Q  2 catggggtgtacaagggtgtatgacaataaaaagtgtctattgtatcattactct 56  Q
    |||||| ||||||||||||||||| ||||||  ||||||| ||||||||||||||    
T  36362144 catgggatgtacaagggtgtatgagaataaagggtgtcta-tgtatcattactct 36362197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 19436158 - 19436117
Alignment:
Q  1 gcatggggtgtacaagggtgtatgacaataaaaagtgtctat 42  Q
    ||||||||||||||||||||||||| ||||||  ||||||||    
T  19436158 gcatggggtgtacaagggtgtatgagaataaatggtgtctat 19436117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 9 - 57
Target Start/End: Complemental strand, 36361888 - 36361841
Alignment:
Q  9 tgtacaagggtgtatgacaataaaaagtgtctattgtatcattactcta 57  Q
    ||||||||||||||||| ||||||  ||||||| |||||||||||||||    
T  36361888 tgtacaagggtgtatgagaataaagggtgtcta-tgtatcattactcta 36361841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 32505619 - 32505566
Alignment:
Q  1 gcatggggtgtacaagggtgtatgacaataaaaagtgtctattgtatcattactc 55  Q
    ||||||||||||||||||||||||| |||||| |||||||| |||||||||||||    
T  32505619 gcatggggtgtacaagggtgtatgagaataaagagtgtcta-tgtatcattactc 32505566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 10249353 - 10249300
Alignment:
Q  1 gcatggggtgtacaagggtgtatgacaataaaaagtgtctattgtatcattactc 55  Q
    ||||||||||||||||||||||||| ||||||  ||||||| |||||||||||||    
T  10249353 gcatggggtgtacaagggtgtatgagaataaagggtgtcta-tgtatcattactc 10249300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 40701607 - 40701662
Alignment:
Q  1 gcatggggtgtacaagggtgtatgacaataaaaagtgtctattgtatcattactcta 57  Q
    |||| |||||||||||||||||||  ||||||| ||||||| |||||||||||||||    
T  40701607 gcatcgggtgtacaagggtgtatggaaataaaaggtgtcta-tgtatcattactcta 40701662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 19930791 - 19930737
Alignment:
Q  1 gcatggggtgtacaagggtgtatgacaataaaaagtgtctattgtatcattactct 56  Q
    ||||| ||||||||||||||||||  ||||||| ||||||| ||||||||||||||    
T  19930791 gcatgaggtgtacaagggtgtatgggaataaaaggtgtcta-tgtatcattactct 19930737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 33436071 - 33436030
Alignment:
Q  1 gcatggggtgtacaagggtgtatgacaataaaaagtgtctat 42  Q
    ||||| ||||||||||||||||||| ||||||| ||||||||    
T  33436071 gcatgaggtgtacaagggtgtatgagaataaaaggtgtctat 33436030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 4060814 - 4060869
Alignment:
Q  1 gcatggggtgtacaagggtgtatgacaataaaaagtgtctattgtatcattactcta 57  Q
    ||||||||||||||||||||||||  |||||||  ||| || |||||||||||||||    
T  4060814 gcatggggtgtacaagggtgtatggaaataaaagatgttta-tgtatcattactcta 4060869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 2 - 58
Target Start/End: Original strand, 27864821 - 27864876
Alignment:
Q  2 catggggtgtacaagggtgtatgacaataaaaagtgtctattgtatcattactctaa 58  Q
    |||||| ||||||||||||||||| ||||||  ||||| | ||||||||||||||||    
T  27864821 catgggatgtacaagggtgtatgagaataaagggtgtc-aatgtatcattactctaa 27864876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000005; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 11427747 - 11427801
Alignment:
Q  1 gcatggggtgtacaagggtgtatgacaataaaaagtgtctattgtatcattactct 56  Q
    ||||||||||||||||||||||||| ||||||  ||||||| ||||||||||||||    
T  11427747 gcatggggtgtacaagggtgtatgagaataaagggtgtcta-tgtatcattactct 11427801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 17598683 - 17598737
Alignment:
Q  1 gcatggggtgtacaagggtgtatgacaataaaaagtgtctattgtatcattactct 56  Q
    ||||||||||||||||||||||||  ||||||| ||||||| ||||||||||||||    
T  17598683 gcatggggtgtacaagggtgtatggaaataaaaggtgtcta-tgtatcattactct 17598737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 29857956 - 29858010
Alignment:
Q  1 gcatggggtgtacaagggtgtatgacaataaaaagtgtctattgtatcattactct 56  Q
    ||||||||||||||||||||||||  ||||||  ||||||| ||||||||||||||    
T  29857956 gcatggggtgtacaagggtgtatgggaataaatggtgtcta-tgtatcattactct 29858010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000005; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 9474847 - 9474793
Alignment:
Q  1 gcatggggtgtacaagggtgtatgacaataaaaagtgtctattgtatcattactct 56  Q
    ||||||| ||||||||||||||||| |||||| |||||||| ||||||||||||||    
T  9474847 gcatgggatgtacaagggtgtatgagaataaagagtgtcta-tgtatcattactct 9474793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 41758934 - 41758987
Alignment:
Q  1 gcatggggtgtacaagggtgtatgacaataaaaagtgtctattgtatcattactc 55  Q
    ||||||||||||||||||||||||| ||||||  ||||||| |||||||||||||    
T  41758934 gcatggggtgtacaagggtgtatgagaataaagggtgtcta-tgtatcattactc 41758987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 27564706 - 27564651
Alignment:
Q  1 gcatggggtgtacaagggtgtatgacaataaaaagtgtctattgtatcattactcta 57  Q
    ||||||||||||||||||||||||  ||||||  ||||||| |||||||||||||||    
T  27564706 gcatggggtgtacaagggtgtatgggaataaagggtgtcta-tgtatcattactcta 27564651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 47452291 - 47452238
Alignment:
Q  1 gcatggggtgtacaagggtgtatgacaataaaaagtgtctattgtatcattactc 55  Q
    ||||||||||||||||| ||||||  |||||| |||||||| |||||||||||||    
T  47452291 gcatggggtgtacaaggatgtatgggaataaagagtgtcta-tgtatcattactc 47452238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 48716253 - 48716200
Alignment:
Q  1 gcatggggtgtacaagggtgtatgacaataaaaagtgtctattgtatcattactc 55  Q
    ||||||||||||||||||||||||  ||||||  ||||||| |||||||||||||    
T  48716253 gcatggggtgtacaagggtgtatgggaataaagggtgtcta-tgtatcattactc 48716200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 37649327 - 37649379
Alignment:
Q  1 gcatggggtgtacaagggtgtatgacaataaaaagtgtctattgtatcattact 54  Q
    ||||||||||||||||||||||||  ||||||  ||||||| ||||||||||||    
T  37649327 gcatggggtgtacaagggtgtatgggaataaagggtgtcta-tgtatcattact 37649379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 504092 - 504039
Alignment:
Q  1 gcatggggtgtacaagggtgtatgacaataaaaagtgtctattgtatcattactc 55  Q
    ||||||||||||||||||||||||| ||||||  ||||||| |||||||||||||    
T  504092 gcatggggtgtacaagggtgtatgagaataaagggtgtcta-tgtatcattactc 504039  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 12831176 - 12831229
Alignment:
Q  1 gcatggggtgtacaagggtgtatgacaataaaaagtgtctattgtatcattactc 55  Q
    ||||||||||||||||||||||||| ||||||  ||||||| |||||||||||||    
T  12831176 gcatggggtgtacaagggtgtatgagaataaatggtgtcta-tgtatcattactc 12831229  T

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Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 15197462 - 15197515
Alignment:
Q  1 gcatggggtgtacaagggtgtatgacaataaaaagtgtctattgtatcattactc 55  Q
    ||||| ||||||||||||||||||  ||||||||||||||| |||||||||||||    
T  15197462 gcatgaggtgtacaagggtgtatgggaataaaaagtgtcta-tgtatcattactc 15197515  T

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Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 23122568 - 23122515
Alignment:
Q  1 gcatggggtgtacaagggtgtatgacaataaaaagtgtctattgtatcattactc 55  Q
    ||||||||||||||||||||||||| ||||||  ||||||| |||||||||||||    
T  23122568 gcatggggtgtacaagggtgtatgagaataaagggtgtcta-tgtatcattactc 23122515  T

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Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 34012267 - 34012213
Alignment:
Q  1 gcatggggtgtacaagggtgtatgacaataaaaagtgtctattgtatcattactct 56  Q
    |||||||||||||||||||||| || ||||||  ||||||| ||||||||||||||    
T  34012267 gcatggggtgtacaagggtgtacgagaataaagggtgtcta-tgtatcattactct 34012213  T

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Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 44507058 - 44507006
Alignment:
Q  1 gcatggggtgtacaagggtgtatgacaataaaaagtgtctattgtatcattactc 55  Q
    ||||||||||||||||||||||||| |||||| | |||||| |||||||||||||    
T  44507058 gcatggggtgtacaagggtgtatgagaataaata-tgtcta-tgtatcattactc 44507006  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 35785328 - 35785381
Alignment:
Q  1 gcatggggtgtacaagggtgtatgacaataaaaagtgtctattgtatcattactc 55  Q
    ||||||||||||||||||||||||  ||||||| ||||||| |||||||||||||    
T  35785328 gcatggggtgtacaagggtgtatggaaataaaaggtgtcta-tgtatcattactc 35785381  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 18520855 - 18520801
Alignment:
Q  1 gcatggggtgtacaagggtgtatgacaataaaaagtgtctattgtatcattactct 56  Q
    ||||| ||||||||||||||||||| ||||||  ||||||| ||||||||||||||    
T  18520855 gcatgaggtgtacaagggtgtatgaaaataaagggtgtcta-tgtatcattactct 18520801  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 33149609 - 33149555
Alignment:
Q  1 gcatggggtgtacaagggtgtatgacaataaaaagtgtctattgtatcattactct 56  Q
    |||||||||||||||||||||| || ||||||  ||||||| ||||||||||||||    
T  33149609 gcatggggtgtacaagggtgtacgagaataaagggtgtcta-tgtatcattactct 33149555  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 35943863 - 35943822
Alignment:
Q  1 gcatggggtgtacaagggtgtatgacaataaaaagtgtctat 42  Q
    ||||||||||||||||||||||||  ||||||| ||||||||    
T  35943863 gcatggggtgtacaagggtgtatggaaataaaatgtgtctat 35943822  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 2 - 42
Target Start/End: Complemental strand, 30801703 - 30801663
Alignment:
Q  2 catggggtgtacaagggtgtatgacaataaaaagtgtctat 42  Q
    |||||||||||||||||||||||| ||||||| ||||||||    
T  30801703 catggggtgtacaagggtgtatgagaataaaaggtgtctat 30801663  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 11095338 - 11095284
Alignment:
Q  1 gcatggggtgtacaagggtgtatgacaataaaaagtgtctattgtatcattactct 56  Q
    |||| |||||||||||||||||||| ||||||  ||||||| ||||||||||||||    
T  11095338 gcatcgggtgtacaagggtgtatgagaataaagggtgtcta-tgtatcattactct 11095284  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 54868866 - 54868812
Alignment:
Q  1 gcatggggtgtacaagggtgtatgacaataaaaagtgtctattgtatcattactct 56  Q
    |||| |||||||||||||||||||  ||||||| ||||||| ||||||||||||||    
T  54868866 gcatagggtgtacaagggtgtatggaaataaaaggtgtcta-tgtatcattactct 54868812  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 2 - 54
Target Start/End: Complemental strand, 27714873 - 27714822
Alignment:
Q  2 catggggtgtacaagggtgtatgacaataaaaagtgtctattgtatcattact 54  Q
    ||||||||||||||||||||| || |||||| ||||| || ||||||||||||    
T  27714873 catggggtgtacaagggtgtacgagaataaagagtgtata-tgtatcattact 27714822  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 2 - 42
Target Start/End: Complemental strand, 35965752 - 35965712
Alignment:
Q  2 catggggtgtacaagggtgtatgacaataaaaagtgtctat 42  Q
    |||| ||||||||||||||||||| ||||||| ||||||||    
T  35965752 catgaggtgtacaagggtgtatgagaataaaaggtgtctat 35965712  T

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Target: scaffold0237 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0237
Description:

Target: scaffold0237; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 4158 - 4212
Alignment:
Q  1 gcatggggtgtacaagggtgtatgacaataaaaagtgtctattgtatcattactct 56  Q
    ||||||||||||||||||||||||  ||||||  ||||||| ||||||||||||||    
T  4158 gcatggggtgtacaagggtgtatgggaataaatggtgtcta-tgtatcattactct 4212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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