View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18271_low_5 (Length: 484)
Name: NF18271_low_5
Description: NF18271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18271_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 413; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 413; E-Value: 0
Query Start/End: Original strand, 17 - 477
Target Start/End: Complemental strand, 45097288 - 45096833
Alignment:
| Q |
17 |
tttaggcccctcgcagtttgtggtggcattttctgaaattgcaattcttagtttttaggtccttttaatttgcctgcaatttagggatctcaaatgttct |
116 |
Q |
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| T |
45097288 |
tttaggcccctcgcagtttgtggtggcattttctgaaattgcaattcttagtttttaggtcctttt-----gcctgcaatttagggatctcaaatgttct |
45097194 |
T |
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| Q |
117 |
taatactgaactcattggtgctacaaatgcagcataaagtgctcatgagaaatatgcttgttttcttggctttcaagtcttctaaggttgtcccttggcc |
216 |
Q |
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| T |
45097193 |
taatactgaactcattggtgctacgaatgcagcatagagtgctcatgagaaatatgcttgttttcttggctttcaagtcttctaaggttgtcccgtggcc |
45097094 |
T |
|
| Q |
217 |
gttgattgaagaacagatgagagaattgtctctatttcatttcctctacgtccttctatttcattctattcacatttacagagcagtaaatcaatgtgct |
316 |
Q |
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| T |
45097093 |
gttgattgaagaacagatgagagaattgtctctatttcatttcctctacgtccttctatttcattctattcacatttacagagcagtaaatcaacgtgct |
45096994 |
T |
|
| Q |
317 |
gattagcttgctaatcttcgtttaagtttgagttcttatgcttggtggtctcagttgcctaaccaaattagagacgattatattagaaatagattaggtt |
416 |
Q |
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| T |
45096993 |
gattagcttgctaatcttcgtttaagtttgagttcttatgcttggtggtttcagttgcctaaccaaattagagacgactatattagaaatagattaggtt |
45096894 |
T |
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| Q |
417 |
ttgcaatttacgattttgttagctctttttgagggtttggtcttatatcccattcttttca |
477 |
Q |
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| T |
45096893 |
ttacaatttacgattttgttagctctttttgagggtttggtcttatatcccattcttttca |
45096833 |
T |
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Target: chr6 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 174 - 215
Target Start/End: Complemental strand, 11775932 - 11775891
Alignment:
| Q |
174 |
ttgttttcttggctttcaagtcttctaaggttgtcccttggc |
215 |
Q |
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| T |
11775932 |
ttgttttcttagctttcaagtcttctaaggttgtcccttggc |
11775891 |
T |
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