View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18271_low_6 (Length: 437)

Name: NF18271_low_6
Description: NF18271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18271_low_6
NF18271_low_6
[»] chr6 (2 HSPs)
chr6 (7-421)||(11329695-11330106)
chr6 (346-421)||(11346782-11346856)
[»] chr2 (1 HSPs)
chr2 (180-277)||(8917556-8917657)
[»] chr8 (1 HSPs)
chr8 (181-277)||(27069018-27069114)
[»] chr7 (2 HSPs)
chr7 (208-279)||(26937624-26937695)
chr7 (64-93)||(22768652-22768681)
[»] chr4 (1 HSPs)
chr4 (66-109)||(44608197-44608240)
[»] chr3 (1 HSPs)
chr3 (213-279)||(41535529-41535595)


Alignment Details
Target: chr6 (Bit Score: 267; Significance: 1e-149; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 7 - 421
Target Start/End: Complemental strand, 11330106 - 11329695
Alignment:
Q  7 agagatccattgtgtaagataacatatgtagaaagagtctcacacttgaataaaagaaattgtgatgtgttaagtgtgagttaaagtttcaaattaaata 106  Q
    |||||| ||||||||||||||||||| ||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11330106 agagattcattgtgtaagataacatacgtagaaatagtctcacacttaaataaaagaaattgtgatgtgttaagtgtgagttaaagtttcaaattaaata 11330007  T
Q  107 aaagaggtttagattaaataaaacactggatcgaaatacattgtccaatccaatgaagcatgtgtttggaatcccaataccgtgtcccaatgaactttcg 206  Q
    ||||||||| |||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||| | || |||||||||||||||||| ||||    
T  11330006 aaagaggttcagattaaataaaacactggatcaaaatacattgtccaatccagtgaagcatgtgtttggaaactcagtaccgtgtcccaatgaacattcg 11329907  T
Q  207 tcgtgaaaattttgaagctagtatgccaagcttctgcgttgccatgattctcaacgtgatattgtccaaatacaagaagctttatctcattgccca-at- 304  Q
    ||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||| |||||||||||        || |  ||||| | || ||     
T  11329906 tcgtgaaaattttgaagttagtatgccaagcttctgcgttgccgtgattctcaacgtgattttgtccaaata-------attgacgtcattccacacata 11329814  T
Q  305 --ataagttttgtccttattccttaatgtataaaaatcctaactgctgacatcgttaattcggtttatagaaagctagaaaccttttttcatttcttgat 402  Q
      | ||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||| ||| ||||||||||||||||||||    
T  11329813 caagaagctttgtccttattccttaatgtataaaaatcctaactgctgacatcgttacttcggtttattgaaagcaagataccttttttcatttcttgat 11329714  T
Q  403 caatagaaagcaaaaacct 421  Q
    |||||||||||||||||||    
T  11329713 caatagaaagcaaaaacct 11329695  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 346 - 421
Target Start/End: Original strand, 11346782 - 11346856
Alignment:
Q  346 tgctgacatcgttaattcggtttatagaaagctagaaaccttttttcatttcttgatcaatagaaagcaaaaacct 421  Q
    ||||||||||||||  |||  || |||||||| ||||||||||| |||||||||||||||| |||||||| |||||    
T  11346782 tgctgacatcgttagatcgaattttagaaagcaagaaacctttt-tcatttcttgatcaatggaaagcaagaacct 11346856  T

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Target: chr2 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 180 - 277
Target Start/End: Complemental strand, 8917657 - 8917556
Alignment:
Q  180 ccaataccgtgtcccaatgaactttcgtcgtgaaaattttga----agctagtatgccaagcttctgcgttgccatgattctcaacgtgatattgtccaa 275  Q
    |||||||||  |||||||| |||||||||||||||||| |||    ||||||||| | |||||||||||||||  | |||||| ||||||| ||||||||    
T  8917657 ccaataccgcatcccaatgcactttcgtcgtgaaaattctgaagctagctagtatacaaagcttctgcgttgctttaattctcgacgtgattttgtccaa 8917558  T
Q  276 at 277  Q
    ||    
T  8917557 at 8917556  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 181 - 277
Target Start/End: Original strand, 27069018 - 27069114
Alignment:
Q  181 caataccgtgtcccaatgaactttcgtcgtgaaaattttgaagctagtatgccaagcttctgcgttgccatgattctcaacgtgatattgtccaaat 277  Q
    ||||||||  |||||||| | ||| || ||||||||| |||||||| ||| |||||||||||||||||  ||||| || | ||||| ||||| ||||    
T  27069018 caataccgcatcccaatgcatttttgttgtgaaaattctgaagctaatataccaagcttctgcgttgctgtgattttcgatgtgattttgtctaaat 27069114  T

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Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 208 - 279
Target Start/End: Original strand, 26937624 - 26937695
Alignment:
Q  208 cgtgaaaattttgaagctagtatgccaagcttctgcgttgccatgattctcaacgtgatattgtccaaatac 279  Q
    |||||||||| ||||||||||||| |||||||||| |||||| || || ||| || ||| | ||||||||||    
T  26937624 cgtgaaaattctgaagctagtatgtcaagcttctgtgttgccgtgtttttcaccgcgatttagtccaaatac 26937695  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 64 - 93
Target Start/End: Complemental strand, 22768681 - 22768652
Alignment:
Q  64 aattgtgatgtgttaagtgtgagttaaagt 93  Q
    ||||||||||||||||||||||||||||||    
T  22768681 aattgtgatgtgttaagtgtgagttaaagt 22768652  T

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Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 66 - 109
Target Start/End: Complemental strand, 44608240 - 44608197
Alignment:
Q  66 ttgtgatgtgttaagtgtgagttaaagtttcaaattaaataaaa 109  Q
    |||||||||||||||||||||||||||| ||| ||| |||||||    
T  44608240 ttgtgatgtgttaagtgtgagttaaagtctcacattgaataaaa 44608197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 213 - 279
Target Start/End: Original strand, 41535529 - 41535595
Alignment:
Q  213 aaattttgaagctagtatgccaagcttctgcgttgccatgattctcaacgtgatattgtccaaatac 279  Q
    ||||| ||||||||||||  |||||||||| ||||||||| || |||||| ||| ||||| ||||||    
T  41535529 aaattctgaagctagtatatcaagcttctgtgttgccatggttttcaacgcgattttgtctaaatac 41535595  T

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