View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18271_low_7 (Length: 380)
Name: NF18271_low_7
Description: NF18271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18271_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 345; Significance: 0; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 18 - 366
Target Start/End: Original strand, 39675976 - 39676324
Alignment:
| Q |
18 |
ccttcattacgatgaagaagaagatgaagttgctgacattgctgcgaaaaccaccaaagtcatgccaaatctaccggaggaaatccttgtccaaaaagtt |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39675976 |
ccttcattacgatgaagaagaagatgaagttgctgacattgctgcgaaaaccaccaaagtcatgccaaatctaccggaggaaatccttgtccaaaaagtt |
39676075 |
T |
|
| Q |
118 |
ttgtcgatggaagatgaggaggttgttggtgcagtggtgtctggatcaattccatcttactcgcttgaatcgaagcttggagattgccgacgtgctgctg |
217 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39676076 |
ttgtccatggaagatgaggaggttgttggtgcagtggtgtctggatcaattccatcttactcgcttgaatcgaagcttggagattgccgacgtgctgctg |
39676175 |
T |
|
| Q |
218 |
tgattaggaaccaagctgtggagagagttactggaaggtcacttgaaggtttaccaatggaaggttttgattatgattctatattaggacaatgttgcga |
317 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39676176 |
tgattaggaaccaagctgtggagagagttactggaaggtcacttgaaggtttaccaatggaaggttttgattatgattctatattaggacaatgttgcga |
39676275 |
T |
|
| Q |
318 |
gatgccaatagggtttgttcagattccggtgggtgttgccggtcctttg |
366 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
39676276 |
gatgccaatagggtttgttcagattccggtgggtgttgccggtcctttg |
39676324 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 108 - 366
Target Start/End: Complemental strand, 10873803 - 10873545
Alignment:
| Q |
108 |
ccaaaaagttttgtcgatggaagatgaggaggttgttggtgcagtggtgtctggatcaattccatcttactcgcttgaatcgaagcttggagattgccga |
207 |
Q |
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|||||||||| |||| |||||||| ||||||||||| ||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
10873803 |
ccaaaaagttatgtccatggaagacgaggaggttgtcagtgcagtggtgtcaggatcaattccatcttactcgcttgaatccaagcttggagattgccga |
10873704 |
T |
|
| Q |
208 |
cgtgctgctgtgattaggaaccaagctgtggagagagttactggaaggtcacttgaaggtttaccaatggaaggttttgattatgattctatattaggac |
307 |
Q |
| |
|
||||| || |||||||||||||| |||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||| |
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| T |
10873703 |
cgtgcagcaaatattaggaaccaagccgtggagagagttaccggaaggtcacttgaaggtttaccgatggaaggttttgattacgattctatattaggac |
10873604 |
T |
|
| Q |
308 |
aatgttgcgagatgccaatagggtttgttcagattccggtgggtgttgccggtcctttg |
366 |
Q |
| |
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| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
10873603 |
agtgttgcgagatgcccatagggtttgttcagattccggtgggtgttgccggtcctttg |
10873545 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 108 - 366
Target Start/End: Complemental strand, 10878874 - 10878616
Alignment:
| Q |
108 |
ccaaaaagttttgtcgatggaagatgaggaggttgttggtgcagtggtgtctggatcaattccatcttactcgcttgaatcgaagcttggagattgccga |
207 |
Q |
| |
|
|||||||||| |||| |||||||| ||||||||||| ||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||| |
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|
| T |
10878874 |
ccaaaaagttatgtccatggaagacgaggaggttgtcagtgcagtggtgtcaggatcaattccatcttactcgcttgaatccaagcttggagattgccga |
10878775 |
T |
|
| Q |
208 |
cgtgctgctgtgattaggaaccaagctgtggagagagttactggaaggtcacttgaaggtttaccaatggaaggttttgattatgattctatattaggac |
307 |
Q |
| |
|
||||| || |||||||||||||| |||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||| |
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| T |
10878774 |
cgtgcagcaaatattaggaaccaagccgtggagagagttaccggaaggtcacttgaaggtttaccgatggaaggttttgattacgattctatattaggac |
10878675 |
T |
|
| Q |
308 |
aatgttgcgagatgccaatagggtttgttcagattccggtgggtgttgccggtcctttg |
366 |
Q |
| |
|
| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
10878674 |
agtgttgcgagatgcccatagggtttgttcagattccggtgggtgttgccggtcctttg |
10878616 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 108 - 366
Target Start/End: Complemental strand, 10883945 - 10883687
Alignment:
| Q |
108 |
ccaaaaagttttgtcgatggaagatgaggaggttgttggtgcagtggtgtctggatcaattccatcttactcgcttgaatcgaagcttggagattgccga |
207 |
Q |
| |
|
|||||||||| |||| |||||||| ||||||||||| ||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||| |
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|
| T |
10883945 |
ccaaaaagttatgtccatggaagacgaggaggttgtcagtgcagtggtgtcaggatcaattccatcttactcgcttgaatccaagcttggagattgccga |
10883846 |
T |
|
| Q |
208 |
cgtgctgctgtgattaggaaccaagctgtggagagagttactggaaggtcacttgaaggtttaccaatggaaggttttgattatgattctatattaggac |
307 |
Q |
| |
|
||||| || |||||||||||||| |||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||| |
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|
| T |
10883845 |
cgtgcagcaaatattaggaaccaagccgtggagagagttaccggaaggtcacttgaaggtttaccgatggaaggttttgattacgattctatattaggac |
10883746 |
T |
|
| Q |
308 |
aatgttgcgagatgccaatagggtttgttcagattccggtgggtgttgccggtcctttg |
366 |
Q |
| |
|
| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
10883745 |
agtgttgcgagatgcccatagggtttgttcagattccggtgggtgttgccggtcctttg |
10883687 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 108 - 366
Target Start/End: Original strand, 10866502 - 10866760
Alignment:
| Q |
108 |
ccaaaaagttttgtcgatggaagatgaggaggttgttggtgcagtggtgtctggatcaattccatcttactcgcttgaatcgaagcttggagattgccga |
207 |
Q |
| |
|
|||||||||| |||| |||||||| ||||||||||| ||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
10866502 |
ccaaaaagttatgtccatggaagacgaggaggttgtcagtgcagtggtgtcaggatcaattccatcttactcgcttgaatccaagcttggagattgccga |
10866601 |
T |
|
| Q |
208 |
cgtgctgctgtgattaggaaccaagctgtggagagagttactggaaggtcacttgaaggtttaccaatggaaggttttgattatgattctatattaggac |
307 |
Q |
| |
|
||||| || |||||||||||||| |||||||||||||| ||||||||||||||||||||||| |||||||||||||| || ||||||||||||||| |
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|
| T |
10866602 |
cgtgcagcaaatattaggaaccaagcggtggagagagttaccggaaggtcacttgaaggtttaccgatggaaggttttgactacaattctatattaggac |
10866701 |
T |
|
| Q |
308 |
aatgttgcgagatgccaatagggtttgttcagattccggtgggtgttgccggtcctttg |
366 |
Q |
| |
|
| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
10866702 |
agtgttgcgagatgccgatagggtttgttcagattccggtgggtgttgccggtcctttg |
10866760 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 108 - 366
Target Start/End: Complemental strand, 10887863 - 10887605
Alignment:
| Q |
108 |
ccaaaaagttttgtcgatggaagatgaggaggttgttggtgcagtggtgtctggatcaattccatcttactcgcttgaatcgaagcttggagattgccga |
207 |
Q |
| |
|
|||||||||| |||| |||||||| || |||||||| ||||||||||| || ||||||||||| |||||||| ||||| |||||||| ||||||||||| |
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|
| T |
10887863 |
ccaaaaagttatgtccatggaagacgaagaggttgtcggtgcagtggtatcgggatcaattccttcttactcccttgagtcgaagctcggagattgccgt |
10887764 |
T |
|
| Q |
208 |
cgtgctgctgtgattaggaaccaagctgtggagagagttactggaaggtcacttgaaggtttaccaatggaaggttttgattatgattctatattaggac |
307 |
Q |
| |
|
||||| || ||||||||||||||| |||||||| ||||| ||||||||||||||||||||||| ||| |||||||||| || |||||||||||||||| |
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|
| T |
10887763 |
cgtgcagcaaagattaggaaccaagcagtggagagggttaccggaaggtcacttgaaggtttaccgatgaaaggttttgactacgattctatattaggac |
10887664 |
T |
|
| Q |
308 |
aatgttgcgagatgccaatagggtttgttcagattccggtgggtgttgccggtcctttg |
366 |
Q |
| |
|
| |||||||||||||| |||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
10887663 |
agtgttgcgagatgccgatagggtttgttcaaattccggtgggtgttgccggtcctttg |
10887605 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 124 - 366
Target Start/End: Original strand, 10046138 - 10046380
Alignment:
| Q |
124 |
atggaagatgaggaggttgttggtgcagtggtgtctggatcaattccatcttactcgcttgaatcgaagcttggagattgccgacgtgctgctgtgatta |
223 |
Q |
| |
|
||||||||||| |||||||| |||| ||||| | || ||||||| || |||||||||||||| || || ||||||||| |||||| || | ||| |
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|
| T |
10046138 |
atggaagatgacgaggttgtccgtgcggtggtaaccggtacaattccgtcatactcgcttgaatcaaaactcggagattgcaaacgtgcggcggcgatac |
10046237 |
T |
|
| Q |
224 |
ggaaccaagctgtggagagagttactggaaggtcacttgaaggtttaccaatggaaggttttgattatgattctatattaggacaatgttgcgagatgcc |
323 |
Q |
| |
|
| |||||||| |||||||||||||| |||| |||||| |||||||||||||||||||||||||||||||| ||||||||||| ||||| |||||||| |
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|
| T |
10046238 |
gtaaccaagcggtggagagagttaccggaaagtcactctcgggtttaccaatggaaggttttgattatgattcgatattaggacagtgttgtgagatgcc |
10046337 |
T |
|
| Q |
324 |
aatagggtttgttcagattccggtgggtgttgccggtcctttg |
366 |
Q |
| |
|
||||| |||||||||||||||||||| |||||||| |||||| |
|
|
| T |
10046338 |
gataggatttgttcagattccggtgggagttgccggacctttg |
10046380 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 262 - 362
Target Start/End: Complemental strand, 30709688 - 30709588
Alignment:
| Q |
262 |
gaaggtttaccaatggaaggttttgattatgattctatattaggacaatgttgcgagatgccaatagggtttgttcagattccggtgggtgttgccggtc |
361 |
Q |
| |
|
||||||||||| |||||||||||||||| ||||| ||||| ||||| ||||| |||||||| |||||||||||||| |||||||| |||||||| |||| |
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|
| T |
30709688 |
gaaggtttaccgttggaaggttttgattacgattcgatattgggacagtgttgtgagatgccgatagggtttgttcaaattccggttggtgttgcgggtc |
30709589 |
T |
|
| Q |
362 |
c |
362 |
Q |
| |
|
| |
|
|
| T |
30709588 |
c |
30709588 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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