View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18271_low_8 (Length: 376)
Name: NF18271_low_8
Description: NF18271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18271_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 324; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 11 - 362
Target Start/End: Complemental strand, 32427979 - 32427628
Alignment:
| Q |
11 |
atcatcagaagaacaaatgttccattgttgttgaccactactcacagtgaagctattacttcctgaactctcttgatcctcacagagtgaaccacctctt |
110 |
Q |
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| T |
32427979 |
atcaccagaagaacaaatgttccattgttgttgaccactactcacagtgaagctattacttcctgaactctcttgatcctcacagagtgaaccacctctt |
32427880 |
T |
|
| Q |
111 |
ttaacagtaacatacttgtgtaaacttggttccatcacatcatcactcacaacaagctcagattctacaaatgatgattcaggaacagcaacattgttgt |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32427879 |
ttaacagtaacatacttgtgtaaacttggttccatcacatcatcactcacaacaagctcagattctacaaatgatgattcaggaacagcaacattgttgt |
32427780 |
T |
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| Q |
211 |
actcattcctagagaaagttgaacttgttgtggagttaagatcagcaacagcttcaaggatagaacaagctttgttgagacgagctggaagagaagcaga |
310 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||| |
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| T |
32427779 |
actcatttctagagaaagttgaacttgttgtggagttaagatcagcaacagcttcaaggatagaacaagctttgttgagacaagctggaagagaaacaga |
32427680 |
T |
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| Q |
311 |
aggctgtgttgtgctcttctgatggaagttttgaatgtcttcaaggagtaat |
362 |
Q |
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||| ||||||||| |||| ||||||||||||||||||||||||||||||||| |
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| T |
32427679 |
aggttgtgttgtgttcttttgatggaagttttgaatgtcttcaaggagtaat |
32427628 |
T |
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