View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18272_high_10 (Length: 517)
Name: NF18272_high_10
Description: NF18272
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18272_high_10 |
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Alignment Details
Target: chr4 (Bit Score: 409; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 409; E-Value: 0
Query Start/End: Original strand, 9 - 500
Target Start/End: Complemental strand, 37604733 - 37604243
Alignment:
| Q |
9 |
gagaagaaatccgcaacttagcattaaccaattcagacggagcagataagttaatatggaaattcattaacaaagggcattatacagtgaagtctgcata |
108 |
Q |
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| T |
37604733 |
gagaagaaatccgcaacttagcattaaccaattcagacggagcagataagttaatatggaaattcattaacaaagggcattatacagcgaagtctgcata |
37604634 |
T |
|
| Q |
109 |
catgtatgatatggaaactctcattgataatgtggagtatagaatgccgggagattggatgagaatgtggaatctgcacatacctcaacggatcaaagnn |
208 |
Q |
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| T |
37604633 |
catgtatgatatggaaactctcattcataatgtggagtatagaatgccgggagattggacgagaatgtggaatctgcacatacctcaacggatcaaagtt |
37604534 |
T |
|
| Q |
209 |
nnnnnatggagtttgttgaggggtgtactcccttcgcatatatgagacttcaaggaannnnnnnttccttcttcggactactgcccctgctgtgagacca |
308 |
Q |
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| T |
37604533 |
tttttatggaggttgttgaggggtgttctcccttcgcatatataagacttcaaggaagggggg-tcccttcttcggactactgccccttctgtgagacca |
37604435 |
T |
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| Q |
309 |
attatgagaatgattggcacatttttatcggatgtgaagtggggaaacaggtttggattgaagctgggttatgggatacgataacagcaggtatcggtag |
408 |
Q |
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| T |
37604434 |
attatgagaatgattggcacatttttatcggatgtgaagtggggaaacaggtttggattgaagctaggttatgggatacgataacagcaggtatcggtag |
37604335 |
T |
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| Q |
409 |
tgccacaggactggcagcacatttgttttctattttctgcaggctgccaaatgaattatgcagggacatagcagctctgttgtggtgtttat |
500 |
Q |
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| T |
37604334 |
tgccacaggactggcagcacatttgttttctattttctgcaggctgccaaatgaattatgcagggacatagcagctctgttgtggtgtttat |
37604243 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 77; Significance: 2e-35; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 147 - 483
Target Start/End: Complemental strand, 8178980 - 8178648
Alignment:
| Q |
147 |
atagaatgccgggagattggatgagaatgtggaatctgcacatacctcaacggatcaaagnnnnnnnatggagtttgttgaggggtgtactcccttcgca |
246 |
Q |
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| T |
8178980 |
atagagtgtcgggtgattggatgagaatgtggaatcttcatatacctcaaaggatcaaagttttcttatggagggtgcttaggggtgttcttcctacgc- |
8178882 |
T |
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| Q |
247 |
tatatgagacttcaaggaannnnnnnttccttcttcggactactgcccctgctgtgagaccaattatgagaatgattggcacatttttatcggatgtgaa |
346 |
Q |
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| T |
8178881 |
-gaatgagacttcaag--atagggggtcccttgttcggattgctgcccccattgtgagaccaattatgagaatgattggcacgttttcatcggatgtgta |
8178785 |
T |
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| Q |
347 |
gtggggaaacaggtttggattgaagctgggttatgggatacgataacagcaggtatcggtagtgccacaggactggcagcacatttgttttctattttct |
446 |
Q |
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| T |
8178784 |
gcagcgaaacaagtatggattgaagctgggctatgggatgtaatagcagcaggtatcgatgccgccacgggactggctgcacatttatttactgtttttt |
8178685 |
T |
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| Q |
447 |
gcaggctgccaaatgaattatgcagggacatagcagc |
483 |
Q |
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| T |
8178684 |
gcaggctgcaaaatcatttgtgcagggacatagcagc |
8178648 |
T |
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