View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18272_high_17 (Length: 357)
Name: NF18272_high_17
Description: NF18272
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18272_high_17 |
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Alignment Details
Target: chr7 (Bit Score: 303; Significance: 1e-170; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 19 - 342
Target Start/End: Original strand, 45242100 - 45242425
Alignment:
| Q |
19 |
gaacagataattgatcaagcatgacttaaccgtgtcacgtgacacaaacaaggtgtgtcgaaatcaccatatattcatcctata--cataccatatttaa |
116 |
Q |
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| T |
45242100 |
gaacagataattgatcaagcatgacttaaccgtgtcacgtgacacaaacaaggtgtgtcgaaatcaccatatattcatcctatatacataccatatttaa |
45242199 |
T |
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| Q |
117 |
atttgatatattaaacccaaacaacactaccgtacaactaacacaggttgaaccaaaatttatgaaatagcagttgcagagtcctgagtggtttcaactt |
216 |
Q |
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| T |
45242200 |
atttgatatattaaacccaaacaacactaccgtacaactaacacaggttgaaccaaaatttatgaaatagcagttgcagagtcctgagtggtttcaactt |
45242299 |
T |
|
| Q |
217 |
tcaagccatgcaagcagaatttgaaaataatacttagtcattcattccttttagaaaacccacagacagcaaatgggttttcagcgataaggagaatgta |
316 |
Q |
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| T |
45242300 |
tcaagccatgcaagcagaatttgaaaataatacttagtcattcattccttttagaaaacccacagacaacaaatgggttttcagggataaggagaatgta |
45242399 |
T |
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| Q |
317 |
gatagggcgtagtgacgtacaatatg |
342 |
Q |
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| T |
45242400 |
gatggggcgtagtgacgtacaatatg |
45242425 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 129 - 175
Target Start/End: Complemental strand, 11425493 - 11425447
Alignment:
| Q |
129 |
aaacccaaacaacactaccgtacaactaacacaggttgaaccaaaat |
175 |
Q |
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| T |
11425493 |
aaacccaaacaacactaccatacgactaacacgtgttgaaccaaaat |
11425447 |
T |
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