View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18272_high_24 (Length: 283)
Name: NF18272_high_24
Description: NF18272
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18272_high_24 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 167; Significance: 2e-89; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 1 - 167
Target Start/End: Original strand, 43490223 - 43490389
Alignment:
| Q |
1 |
cttctcttactacattctctgttcttttatattcgtatactgcattccccatttctcttgttattcttgttgttgtcctattaatgcttgaactttctgc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43490223 |
cttctcttactacattctctgttcttttatattcgtatactgcattccccatttctcttgttattcttgttgttgtcctattaatgcttgaactttctgc |
43490322 |
T |
|
| Q |
101 |
aactgcattattatttgacaccattaatcaaaataataagctttgtatttaatggaagacaaaaata |
167 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43490323 |
aactgcattattatttgacaccattaatcaaaataataagctttgtatttaatggaagacaaaaata |
43490389 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 209 - 253
Target Start/End: Original strand, 43490378 - 43490422
Alignment:
| Q |
209 |
aagacaaaaataacttagtaaatgaactaatgaattaatcgaata |
253 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
43490378 |
aagacaaaaataacttagtaaatgaactaatgaattaatccaata |
43490422 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University