View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18272_high_30 (Length: 244)

Name: NF18272_high_30
Description: NF18272
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18272_high_30
NF18272_high_30
[»] chr4 (8 HSPs)
chr4 (19-244)||(26369018-26369243)
chr4 (128-223)||(31699541-31699636)
chr4 (107-209)||(37306447-37306549)
chr4 (114-209)||(43480280-43480375)
chr4 (113-205)||(51475211-51475303)
chr4 (107-152)||(21710562-21710607)
chr4 (107-152)||(21776549-21776594)
chr4 (114-223)||(30111791-30111899)
[»] chr3 (8 HSPs)
chr3 (107-205)||(28215768-28215866)
chr3 (128-223)||(48543205-48543300)
chr3 (96-223)||(54186959-54187086)
chr3 (114-223)||(13639426-13639535)
chr3 (107-150)||(28215344-28215387)
chr3 (114-223)||(29235671-29235780)
chr3 (68-208)||(38602847-38602985)
chr3 (107-223)||(42780694-42780810)
[»] chr1 (6 HSPs)
chr1 (71-223)||(19078935-19079085)
chr1 (71-223)||(19126823-19126973)
chr1 (107-223)||(31602083-31602199)
chr1 (121-223)||(29068102-29068204)
chr1 (114-223)||(24886061-24886170)
chr1 (111-163)||(43275822-43275874)
[»] chr7 (6 HSPs)
chr7 (111-207)||(41873481-41873577)
chr7 (114-209)||(557425-557520)
chr7 (121-204)||(17878723-17878806)
chr7 (69-163)||(29310429-29310519)
chr7 (107-209)||(47822017-47822119)
chr7 (114-163)||(36738541-36738590)
[»] chr8 (8 HSPs)
chr8 (107-223)||(28700577-28700693)
chr8 (120-223)||(33440558-33440661)
chr8 (114-209)||(45057957-45058052)
chr8 (114-206)||(6580870-6580961)
chr8 (121-168)||(31024177-31024224)
chr8 (113-223)||(30085425-30085535)
chr8 (170-223)||(13990556-13990609)
chr8 (107-151)||(13990546-13990590)
[»] chr6 (2 HSPs)
chr6 (114-206)||(7447614-7447706)
chr6 (131-223)||(32439500-32439592)
[»] chr5 (9 HSPs)
chr5 (128-223)||(5990581-5990676)
chr5 (114-209)||(30892145-30892240)
chr5 (120-209)||(18237190-18237279)
chr5 (128-209)||(32153755-32153836)
chr5 (92-223)||(42958462-42958593)
chr5 (170-221)||(28436427-28436478)
chr5 (107-190)||(36301803-36301886)
chr5 (120-202)||(17190663-17190745)
chr5 (128-205)||(41020240-41020317)
[»] chr2 (4 HSPs)
chr2 (131-209)||(864165-864243)
chr2 (114-209)||(5140018-5140113)
chr2 (120-209)||(37285169-37285258)
chr2 (121-198)||(42635356-42635433)
[»] scaffold0922 (1 HSPs)
scaffold0922 (121-209)||(703-791)


Alignment Details
Target: chr4 (Bit Score: 214; Significance: 1e-117; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 19 - 244
Target Start/End: Complemental strand, 26369243 - 26369018
Alignment:
Q  19 ggtcgttggaatgaaatctgacggtccaaatttcaatgcctattttgatttagagaaatgctaggaacactctctcactctatcatttactcttttattg 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26369243 ggtcgttggaatgaaatctgacggtccaaatttcaatgcctattttgatttagagaaatgctaggaacactctctcactctatcatttactcttttattg 26369144  T
Q  119 agtgaaagtcatgtgggtctcatcactttatgtgggtttcatttctaatgcgtgagacccacacgagtttcaccgaataagagagtgagtgctggagaaa 218  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  26369143 agtgaaagtcatgtgggtctcatcactttatgtgggtttcatttctaaagcgtgagacccacacgagtttcaccgaataagagagtgagtgctagagaaa 26369044  T
Q  219 gtgttcacacttcatagcatctttct 244  Q
    ||||||||||||||||||| ||||||    
T  26369043 gtgttcacacttcatagcacctttct 26369018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 128 - 223
Target Start/End: Original strand, 31699541 - 31699636
Alignment:
Q  128 catgtgggtctcatcactttatgtgggtttcatttctaatgcgtgagacccacacgagtttcaccgaataagagagtgagtgctggagaaagtgtt 223  Q
    ||||||||||||| || |||||||||| | |||||| ||||  ||| ||||||| || ||||||| |||||||||||||||| |||||| ||||||    
T  31699541 catgtgggtctcaccattttatgtggggtccatttccaatgtatgatacccacatgaatttcacccaataagagagtgagtgttggagagagtgtt 31699636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 107 - 209
Target Start/End: Original strand, 37306447 - 37306549
Alignment:
Q  107 actcttttattgagtgaaagtcatgtgggtctcatcactttatgtgggtttcatttctaatgcgtgagacccacacgagtttcaccgaataagagagtga 206  Q
    |||||| ||||| |||||| |||||||||||||| ||||||||||| | | |||||| |||| |||  ||||||| || ||||||| ||||||| |||||    
T  37306447 actcttatattgggtgaaactcatgtgggtctcaccactttatgtgagatccatttccaatgtgtggtacccacatgaatttcacccaataagaaagtga 37306546  T
Q  207 gtg 209  Q
    |||    
T  37306547 gtg 37306549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 114 - 209
Target Start/End: Complemental strand, 43480375 - 43480280
Alignment:
Q  114 tattgagtgaaagtcatgtgggtctcatcactttatgtgggtttcatttctaatgcgtgagacccacacgagtttcaccgaataagagagtgagtg 209  Q
    ||||| |||||| |||||||||||||| ||||||||||||| | |||||  |||| |||  ||||||| || ||||| | ||||||| ||||||||    
T  43480375 tattgggtgaaactcatgtgggtctcaccactttatgtgggatccattttcaatgtgtggtacccacatgaatttcagccaataagaaagtgagtg 43480280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 113 - 205
Target Start/End: Original strand, 51475211 - 51475303
Alignment:
Q  113 ttattgagtgaaagtcatgtgggtctcatcactttatgtgggtttcatttctaatgcgtgagacccacacgagtttcaccgaataagagagtg 205  Q
    |||||| ||||||  ||||||| ||||| ||||||||||||| | |||||| |||| |||  ||||||| |  ||||||| ||||||||||||    
T  51475211 ttattgggtgaaacccatgtggatctcaccactttatgtgggatccatttccaatgtgtggtacccacatggatttcacccaataagagagtg 51475303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 107 - 152
Target Start/End: Original strand, 21710562 - 21710607
Alignment:
Q  107 actcttttattgagtgaaagtcatgtgggtctcatcactttatgtg 152  Q
    |||||||||||| |||||| ||||||| |||| |||||||||||||    
T  21710562 actcttttattgtgtgaaactcatgtgagtcttatcactttatgtg 21710607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 107 - 152
Target Start/End: Original strand, 21776549 - 21776594
Alignment:
Q  107 actcttttattgagtgaaagtcatgtgggtctcatcactttatgtg 152  Q
    |||||||||||| |||||| ||||||| |||||| |||||||||||    
T  21776549 actcttttattgggtgaaattcatgtgagtctcaccactttatgtg 21776594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 114 - 223
Target Start/End: Complemental strand, 30111899 - 30111791
Alignment:
Q  114 tattgagtgaaagtcatgtgggtctcatcactttatgtgggtttcatttctaatgcgtgagacccacacgagtttcaccgaataagagagtgagtgctgg 213  Q
    ||||| |||||| |||||||| ||||| |||||||||||||  ||| ||| |||| |||  ||||||| || ||||| | ||||||| |||||||| | |    
T  30111899 tattgggtgaaactcatgtggatctcaccactttatgtggg-atcaattccaatgtgtggtacccacatgactttcatccaataagaaagtgagtgttag 30111801  T
Q  214 agaaagtgtt 223  Q
    ||| ||||||    
T  30111800 agagagtgtt 30111791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 55; Significance: 1e-22; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 107 - 205
Target Start/End: Original strand, 28215768 - 28215866
Alignment:
Q  107 actcttttattgagtgaaagtcatgtgggtctcatcactttatgtgggtttcatttctaatgcgtgagacccacacgagtttcaccgaataagagagtg 205  Q
    |||||||||||| |||||| |||||||||||||||||||||||| ||| | |||||| || | |||||||||||  |||||||||| ||||||||||||    
T  28215768 actcttttattgggtgaaactcatgtgggtctcatcactttatgcggggtccatttccaaagtgtgagacccacgtgagtttcacccaataagagagtg 28215866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 128 - 223
Target Start/End: Original strand, 48543205 - 48543300
Alignment:
Q  128 catgtgggtctcatcactttatgtgggtttcatttctaatgcgtgagacccacacgagtttcaccgaataagagagtgagtgctggagaaagtgtt 223  Q
    ||||||||||||| || |||||||||| | |||||| ||||  ||  ||||||| || ||||||| |||||||||||||||| |||||| ||||||    
T  48543205 catgtgggtctcaccattttatgtggggtccatttccaatgtatgctacccacatgaatttcacccaataagagagtgagtgttggagagagtgtt 48543300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 96 - 223
Target Start/End: Original strand, 54186959 - 54187086
Alignment:
Q  96 ctctatcatttactcttttattgagtgaaagtcatgtgggtctcatcactttatgtgggtttcatttctaatgcgtgagacccacacgagtttcaccgaa 195  Q
    ||||| |||| |||||  ||||| |||||| |||||||  ||||| || |||||||||| | ||||||||||| |||  ||||||| ||  |||||| ||    
T  54186959 ctctaacattcactctcctattgggtgaaactcatgtgaatctcaccattttatgtgggatccatttctaatgtgtggtacccacatgaacttcacccaa 54187058  T
Q  196 taagagagtgagtgctggagaaagtgtt 223  Q
    |||||||||||||| | |||| ||||||    
T  54187059 taagagagtgagtgttagagagagtgtt 54187086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 114 - 223
Target Start/End: Complemental strand, 13639535 - 13639426
Alignment:
Q  114 tattgagtgaaagtcatgtgggtctcatcactttatgtgggtttcatttctaatgcgtgagacccacacgagtttcaccgaataagagagtgagtgctgg 213  Q
    ||||| |||||| |||||||||||||| ||||||||||| | | |||||| |||| |||| ||||||| || ||||| | ||||| ||||||| || | |    
T  13639535 tattgggtgaaactcatgtgggtctcaccactttatgtgagatccatttccaatgtgtgatacccacatgaatttcatccaataaaagagtgactgttag 13639436  T
Q  214 agaaagtgtt 223  Q
    ||| ||||||    
T  13639435 agagagtgtt 13639426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 107 - 150
Target Start/End: Original strand, 28215344 - 28215387
Alignment:
Q  107 actcttttattgagtgaaagtcatgtgggtctcatcactttatg 150  Q
    |||||||||||| |||||| ||||||||||||||||||||||||    
T  28215344 actcttttattgggtgaaactcatgtgggtctcatcactttatg 28215387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 114 - 223
Target Start/End: Complemental strand, 29235780 - 29235671
Alignment:
Q  114 tattgagtgaaagtcatgtgggtctcatcactttatgtgggtttcatttctaatgcgtgagacccacacgagtttcaccgaataagagagtgagtgctgg 213  Q
    ||||| |||||| |||| || |||||| |||||||||| || | ||||||||||| |||  | || || || ||||||| |||||||||||||||| | |    
T  29235780 tattgggtgaaactcatatgagtctcaccactttatgttggatccatttctaatgtgtggtatcctcatgaatttcacccaataagagagtgagtgttag 29235681  T
Q  214 agaaagtgtt 223  Q
    ||| ||||||    
T  29235680 agagagtgtt 29235671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 68 - 208
Target Start/End: Complemental strand, 38602985 - 38602847
Alignment:
Q  68 ttagagaaatgctaggaacactctctcactctatcatttactcttttattgagtgaaagtcatgtgggtctcatcactttatgtgggtttcatttctaat 167  Q
    |||||||||||||||||||||| |||   |||| || | |||||  ||||| |||||| ||||||| ||||||  |||||||||||| | |||||  |||    
T  38602985 ttagagaaatgctaggaacactttctt--tctagcactcactctcctattgggtgaaactcatgtgagtctcactactttatgtgggatccattttcaat 38602888  T
Q  168 gcgtgagacccacacgagtttcaccgaataagagagtgagt 208  Q
    | |||  |||||||  | ||| ||||||||| |||||||||    
T  38602887 gtgtggtacccacataaattttaccgaataaaagagtgagt 38602847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 107 - 223
Target Start/End: Complemental strand, 42780810 - 42780694
Alignment:
Q  107 actcttttattgagtgaaagtcatgtgggtctcatcactttatgtgggtttca-tttctaatgcgtgagacccacacgagtttcaccgaataagagagtg 205  Q
    ||||| ||||||||||||   ||||||||||||| ||||||||||||| | || ||||||| | |||||||| ||| |  ||||| | ||||||||| ||    
T  42780810 actctcttattgagtgaatcccatgtgggtctcaccactttatgtgggatccattttctaa-gtgtgagacctacatggatttcatccaataagagaatg 42780712  T
Q  206 agtgctggagaaagtgtt 223  Q
    |||| | |||| ||||||    
T  42780711 agtgttagagagagtgtt 42780694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 50; Significance: 1e-19; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 71 - 223
Target Start/End: Complemental strand, 19079085 - 19078935
Alignment:
Q  71 gagaaatgctaggaacactctctcactctatcatttactcttttattgagtgaaagtcatgtgggtctcatcactttatgtgggtttcatttctaatgcg 170  Q
    |||||||||||||||||||||||   | || || | |||||  ||||| |||||| |||||||||||||| ||||||||||||| | |||||| |||| |    
T  19079085 gagaaatgctaggaacactctctt--tttaacactcactctcctattgggtgaaactcatgtgggtctcaccactttatgtgggatccatttccaatgtg 19078988  T
Q  171 tgagacccacacgagtttcaccgaataagagagtgagtgctggagaaagtgtt 223  Q
    ||  |||| || || ||||||| |||||||||||||||| | |||| ||||||    
T  19078987 tggtacccgcatgactttcacccaataagagagtgagtgttagagagagtgtt 19078935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 71 - 223
Target Start/End: Complemental strand, 19126973 - 19126823
Alignment:
Q  71 gagaaatgctaggaacactctctcactctatcatttactcttttattgagtgaaagtcatgtgggtctcatcactttatgtgggtttcatttctaatgcg 170  Q
    |||||||||||||||||||||||   | || || | |||||  ||||| |||||| |||||||||||||| ||||||||||||| | |||||| |||| |    
T  19126973 gagaaatgctaggaacactctctt--tttaacactcactctcctattgggtgaaactcatgtgggtctcaccactttatgtgggatccatttccaatgtg 19126876  T
Q  171 tgagacccacacgagtttcaccgaataagagagtgagtgctggagaaagtgtt 223  Q
    ||  |||| || || ||||||| |||||||||||||||| | |||| ||||||    
T  19126875 tggtacccgcatgactttcacccaataagagagtgagtgttagagagagtgtt 19126823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 107 - 223
Target Start/End: Complemental strand, 31602199 - 31602083
Alignment:
Q  107 actcttttattgagtgaaagtcatgtgggtctcatcactttatgtgggtttcatttctaatgcgtgagacccacacgagtttcaccgaataagagagtga 206  Q
    ||||| ||||||  |||||  ||||||||||||| ||||||| ||||| | |||||| || | |||||||||||| |||||||| | ||||||||| |||    
T  31602199 actctcttattggatgaaacacatgtgggtctcaccactttaggtgggatccatttccaaagtgtgagacccacatgagtttcatccaataagagaatga 31602100  T
Q  207 gtgctggagaaagtgtt 223  Q
    ||| | |||| ||||||    
T  31602099 gtgttagagagagtgtt 31602083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 121 - 223
Target Start/End: Complemental strand, 29068204 - 29068102
Alignment:
Q  121 tgaaagtcatgtgggtctcatcactttatgtgggtttcatttctaatgcgtgagacccacacgagtttcaccgaataagagagtgagtgctggagaaagt 220  Q
    ||||| |||||||||||||| || |||||||||| |  ||||| |||| |||  |||||||||  ||||||| ||||| | |||||||| | ||||||||    
T  29068204 tgaaactcatgtgggtctcaccattttatgtgggatcaatttccaatgtgtggtacccacacgtatttcacccaataaaatagtgagtgttagagaaagt 29068105  T
Q  221 gtt 223  Q
    |||    
T  29068104 gtt 29068102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 114 - 223
Target Start/End: Complemental strand, 24886170 - 24886061
Alignment:
Q  114 tattgagtgaaagtcatgtgggtctcatcactttatgtgggtttcatttctaatgcgtgagacccacacgagtttcaccgaataagagagtgagtgctgg 213  Q
    ||||| |||||| |||||||||||||| | ||||||||||| |  ||||  |||| |||  ||||||| || ||||||| ||||| |||||||||| | |    
T  24886170 tattgggtgaaactcatgtgggtctcaccgctttatgtgggatctatttacaatgtgtggtacccacatgaatttcacccaataaaagagtgagtgttag 24886071  T
Q  214 agaaagtgtt 223  Q
    ||| ||||||    
T  24886070 agagagtgtt 24886061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 111 - 163
Target Start/End: Original strand, 43275822 - 43275874
Alignment:
Q  111 ttttattgagtgaaagtcatgtgggtctcatcactttatgtgggtttcatttc 163  Q
    ||||||||||||||| ||||||||||||||  | |||||||||| | ||||||    
T  43275822 ttttattgagtgaaattcatgtgggtctcacgattttatgtgggatccatttc 43275874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 49; Significance: 4e-19; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 111 - 207
Target Start/End: Original strand, 41873481 - 41873577
Alignment:
Q  111 ttttattgagtgaaagtcatgtgggtctcatcactttatgtgggtttcatttctaatgcgtgagacccacacgagtttcaccgaataagagagtgag 207  Q
    |||||||| |||||| ||||||| |||||||||||||||||||||| ||||||||||| |||  ||||||| ||  |||||| ||||| ||||||||    
T  41873481 ttttattgggtgaaactcatgtgagtctcatcactttatgtgggttccatttctaatgtgtggtacccacatgaacttcacccaataaaagagtgag 41873577  T

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Target: chr7; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 114 - 209
Target Start/End: Original strand, 557425 - 557520
Alignment:
Q  114 tattgagtgaaagtcatgtgggtctcatcactttatgtgggtttcatttctaatgcgtgagacccacacgagtttcaccgaataagagagtgagtg 209  Q
    ||||| |||||| |||||||||||||| ||||||||||||| | ||||| ||||| |||| ||||||| || ||||| | ||||||||||||||||    
T  557425 tattgggtgaaactcatgtgggtctcaccactttatgtgggatccatttttaatgtgtgatacccacatgaatttcatccaataagagagtgagtg 557520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 121 - 204
Target Start/End: Complemental strand, 17878806 - 17878723
Alignment:
Q  121 tgaaagtcatgtgggtctcatcactttatgtgggtttcatttctaatgcgtgagacccacacgagtttcaccgaataagagagt 204  Q
    ||||| |||||| | ||||| ||||||||||||| |  |||||||||| |||| ||||||| || ||||||| |||||||||||    
T  17878806 tgaaactcatgtcgatctcaccactttatgtgggatctatttctaatgtgtgatacccacatgactttcacccaataagagagt 17878723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 69 - 163
Target Start/End: Original strand, 29310429 - 29310519
Alignment:
Q  69 tagagaaatgctaggaacactctctcactctatcatttactcttttattgagtgaaagtcatgtgggtctcatcactttatgtgggtttcatttc 163  Q
    |||||||| |||||||||||||| ||    || || | ||| |||||||| |||||| |||||||||||||| ||||||||||||| | ||||||    
T  29310429 tagagaaaggctaggaacactctttc----taacactcacttttttattgggtgaaactcatgtgggtctcaccactttatgtgggatccatttc 29310519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 107 - 209
Target Start/End: Complemental strand, 47822119 - 47822017
Alignment:
Q  107 actcttttattgagtgaaagtcatgtgggtctcatcactttatgtgggtttcatttctaatgcgtgagacccacacgagtttcaccgaataagagagtga 206  Q
    |||||| ||||| ||||||  ||||||| ||||| ||||||||||||| | |||||| |||| |||  ||||||| |  ||||||| ||||  |||||||    
T  47822119 actcttctattgggtgaaacccatgtggatctcaccactttatgtgggatccatttccaatgtgtggtacccacatggatttcacccaatataagagtga 47822020  T
Q  207 gtg 209  Q
    |||    
T  47822019 gtg 47822017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 114 - 163
Target Start/End: Complemental strand, 36738590 - 36738541
Alignment:
Q  114 tattgagtgaaagtcatgtgggtctcatcactttatgtgggtttcatttc 163  Q
    ||||| |||||| |||||||||||||| ||||||||||||| | ||||||    
T  36738590 tattgggtgaaactcatgtgggtctcaccactttatgtgggatccatttc 36738541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 9e-17; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 107 - 223
Target Start/End: Complemental strand, 28700693 - 28700577
Alignment:
Q  107 actcttttattgagtgaaagtcatgtgggtctcatcactttatgtgggtttcatttctaatgcgtgagacccacacgagtttcaccgaataagagagtga 206  Q
    |||||| |||||||||||| ||||||| |||||| ||||||||||||| |||||||| |||  |||  |||||||  | ||| ||| |||||||||||||    
T  28700693 actcttctattgagtgaaactcatgtgagtctcaccactttatgtgggattcatttccaatatgtggtacccacataaatttaacccaataagagagtga 28700594  T
Q  207 gtgctggagaaagtgtt 223  Q
    ||| | |||| ||||||    
T  28700593 gtgttagagagagtgtt 28700577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 120 - 223
Target Start/End: Original strand, 33440558 - 33440661
Alignment:
Q  120 gtgaaagtcatgtgggtctcatcactttatgtgggtttcatttctaatgcgtgagacccacacgagtttcaccgaataagagagtgagtgctggagaaag 219  Q
    |||||| |||||||||||||| ||||||||||||| | |||||| |||| |||  ||||||| || ||||||| ||||||||||||| || | |||| ||    
T  33440558 gtgaaactcatgtgggtctcaccactttatgtgggatccatttccaatgtgtggtacccacatgactttcacccaataagagagtgaatgttagagagag 33440657  T
Q  220 tgtt 223  Q
    ||||    
T  33440658 tgtt 33440661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 114 - 209
Target Start/End: Original strand, 45057957 - 45058052
Alignment:
Q  114 tattgagtgaaagtcatgtgggtctcatcactttatgtgggtttcatttctaatgcgtgagacccacacgagtttcaccgaataagagagtgagtg 209  Q
    ||||| |||||| | ||||||||||| |||||||||||||| | |||||| || | ||||||| ||||  ||||||| | ||||||||||||||||    
T  45057957 tattgggtgaaacttatgtgggtctcgtcactttatgtgggatccatttccaaagtgtgagactcacataagtttcaaccaataagagagtgagtg 45058052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 114 - 206
Target Start/End: Complemental strand, 6580961 - 6580870
Alignment:
Q  114 tattgagtgaaagtcatgtgggtctcatcactttatgtgggtttcatttctaatgcgtgagacccacacgagtttcaccgaataagagagtga 206  Q
    ||||| |||||| |||||||||||||| |||||||||||||  ||||||| |||| |||  ||||||| || ||||||| |||||||| ||||    
T  6580961 tattgggtgaaactcatgtgggtctcaccactttatgtggg-atcatttccaatgtgtggtacccacatgaatttcacccaataagagggtga 6580870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 121 - 168
Target Start/End: Complemental strand, 31024224 - 31024177
Alignment:
Q  121 tgaaagtcatgtgggtctcatcactttatgtgggtttcatttctaatg 168  Q
    ||||| |||||||||||||| ||||||||||||| ||||||| |||||    
T  31024224 tgaaactcatgtgggtctcaccactttatgtgggattcatttataatg 31024177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 113 - 223
Target Start/End: Original strand, 30085425 - 30085535
Alignment:
Q  113 ttattgagtgaaagtcatgtgggtctcatcactttatgtgggtttcatttctaatgcgtgagacccacacgagtttcaccgaataagagagtgagtgctg 212  Q
    |||||| |||||| |||||||| ||||| ||||||||||||| | |||||| ||   |||| || |||| || ||||||  ||||||||||| |||| |     
T  30085425 ttattgggtgaaactcatgtggatctcaccactttatgtgggatccatttccaacatgtgacactcacatgaatttcactcaataagagagtaagtgtta 30085524  T
Q  213 gagaaagtgtt 223  Q
    |||| ||||||    
T  30085525 gagagagtgtt 30085535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 170 - 223
Target Start/End: Original strand, 13990556 - 13990609
Alignment:
Q  170 gtgagacccacacgagtttcaccgaataagagagtgagtgctggagaaagtgtt 223  Q
    |||||||||||| |||||||||| |||||||||||| ||| | ||| |||||||    
T  13990556 gtgagacccacatgagtttcacccaataagagagtgggtgttagagcaagtgtt 13990609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 107 - 151
Target Start/End: Complemental strand, 13990590 - 13990546
Alignment:
Q  107 actcttttattgagtgaaagtcatgtgggtctcatcactttatgt 151  Q
    ||||| |||||| |||||| |||||||||||||| ||||||||||    
T  13990590 actctcttattgggtgaaactcatgtgggtctcaccactttatgt 13990546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 114 - 206
Target Start/End: Original strand, 7447614 - 7447706
Alignment:
Q  114 tattgagtgaaagtcatgtgggtctcatcactttatgtgggtttcatttctaatgcgtgagacccacacgagtttcaccgaataagagagtga 206  Q
    ||||| |||||  |||||||||||||| ||||||||||||| | ||||||||||| |||  ||||||| || ||||||| || ||||||||||    
T  7447614 tattgggtgaagctcatgtgggtctcaccactttatgtgggatccatttctaatgtgtggtacccacatgaatttcacccaacaagagagtga 7447706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 131 - 223
Target Start/End: Complemental strand, 32439592 - 32439500
Alignment:
Q  131 gtgggtctcatcactttatgtgggtttcatttctaatgcgtgagacccacacgagtttcaccgaataagagagtgagtgctggagaaagtgtt 223  Q
    ||||| |||| | ||||||||||| | |||||| |||| |||  ||||||| || ||||||| |||||||||||||||| | |||| ||||||    
T  32439592 gtggggctcaccgctttatgtgggatccatttccaatgtgtggtacccacatgaatttcacccaataagagagtgagtgttagagagagtgtt 32439500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 128 - 223
Target Start/End: Original strand, 5990581 - 5990676
Alignment:
Q  128 catgtgggtctcatcactttatgtgggtttcatttctaatgcgtgagacccacacgagtttcaccgaataagagagtgagtgctggagaaagtgtt 223  Q
    ||||||||||||| || |||||||||| | |||||| ||||  ||  ||||||| || ||||||| ||||| |||||||||| |||||||||||||    
T  5990581 catgtgggtctcaccattttatgtgggatccatttccaatgtatggtacccacatgaatttcacccaataaaagagtgagtgttggagaaagtgtt 5990676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 114 - 209
Target Start/End: Complemental strand, 30892240 - 30892145
Alignment:
Q  114 tattgagtgaaagtcatgtgggtctcatcactttatgtgggtttcatttctaatgcgtgagacccacacgagtttcaccgaataagagagtgagtg 209  Q
    ||||| |||||| |||| || |||||| || |||||||||| | ||||||||||| |||  ||||||| ||  |||||||||||||||||||||||    
T  30892240 tattgggtgaaactcatatgagtctcaccattttatgtgggatccatttctaatgtgtggtacccacatgaacttcaccgaataagagagtgagtg 30892145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 120 - 209
Target Start/End: Original strand, 18237190 - 18237279
Alignment:
Q  120 gtgaaagtcatgtgggtctcatcactttatgtgggtttcatttctaatgcgtgagacccacacgagtttcaccgaataagagagtgagtg 209  Q
    |||||| |||||||||||||| ||||||||||||| |  ||||  |||| |||| ||||||| || ||||||| ||||| ||||||||||    
T  18237190 gtgaaattcatgtgggtctcaccactttatgtgggatctattttcaatgtgtgatacccacatgaatttcacccaataaaagagtgagtg 18237279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 128 - 209
Target Start/End: Original strand, 32153755 - 32153836
Alignment:
Q  128 catgtgggtctcatcactttatgtgggtttcatttctaatgcgtgagacccacacgagtttcaccgaataagagagtgagtg 209  Q
    ||||||||||||| ||||||||||||| | |||||| || | ||| || ||||| | |||||||| ||||||||||||||||    
T  32153755 catgtgggtctcaccactttatgtgggatccatttccaaagtgtgggatccacatgggtttcacccaataagagagtgagtg 32153836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 92 - 223
Target Start/End: Complemental strand, 42958593 - 42958462
Alignment:
Q  92 ctcactctatcatttactcttttattgagtgaaagtcatgtgggtctcatcactttatgtgggtttcatttctaatgcgtgagacccacacgagtttcac 191  Q
    ||||||||| || | ||| || |||||  ||||| ||||| |||||||| ||||||||||||| | |||||| ||||||||  ||||||| || ||||||    
T  42958593 ctcactctaacactcacttttctattggatgaaactcatgcgggtctcaccactttatgtgggatccatttccaatgcgtggtacccacatgaatttcac 42958494  T
Q  192 cgaataagagagtgagtgctggagaaagtgtt 223  Q
    | ||||| | ||||| || | |||| ||||||    
T  42958493 caaataaaaaagtgactgttagagagagtgtt 42958462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 170 - 221
Target Start/End: Complemental strand, 28436478 - 28436427
Alignment:
Q  170 gtgagacccacacgagtttcaccgaataagagagtgagtgctggagaaagtg 221  Q
    |||||| | |||||||||||||||||| |||||||||||| | |||||||||    
T  28436478 gtgagatctacacgagtttcaccgaatgagagagtgagtgttagagaaagtg 28436427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 107 - 190
Target Start/End: Original strand, 36301803 - 36301886
Alignment:
Q  107 actcttttattgagtgaaagtcatgtgggtctcatcactttatgtgggtttcatttctaatgcgtgagacccacacgagtttca 190  Q
    ||||||||||||||||||| |||||  || | || ||| |||||| || ||||||||||| | ||||||| |||| ||||||||    
T  36301803 actcttttattgagtgaaattcatgacggccgcaccaccttatgttggattcatttctaaagtgtgagactcacatgagtttca 36301886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 120 - 202
Target Start/End: Original strand, 17190663 - 17190745
Alignment:
Q  120 gtgaaagtcatgtgggtctcatcactttatgtgggtttcatttctaatgcgtgagacccacacgagtttcaccgaataagaga 202  Q
    |||||| | |||||||||||| ||||||||||||| | ||||||||||| |||  |||| || || ||||||| || ||||||    
T  17190663 gtgaaacttatgtgggtctcaccactttatgtgggatccatttctaatgtgtggtacccgcatgaatttcacccaacaagaga 17190745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 128 - 205
Target Start/End: Original strand, 41020240 - 41020317
Alignment:
Q  128 catgtgggtctcatcactttatgtgggtttcatttctaatgcgtgagacccacacgagtttcaccgaataagagagtg 205  Q
    ||||||||||||| ||||||||||||| |||||||| |||  |||  |||||||    ||||||| ||||||||||||    
T  41020240 catgtgggtctcaccactttatgtgggattcatttccaatatgtggtacccacatatatttcacccaataagagagtg 41020317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 131 - 209
Target Start/End: Original strand, 864165 - 864243
Alignment:
Q  131 gtgggtctcatcactttatgtgggtttcatttctaatgcgtgagacccacacgagtttcaccgaataagagagtgagtg 209  Q
    ||||| |||||| ||||||||||| | ||||||||||| |||  ||||||| || ||||||| ||||||||||||||||    
T  864165 gtggggctcatcgctttatgtgggatccatttctaatgtgtggtacccacatgaatttcacccaataagagagtgagtg 864243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 114 - 209
Target Start/End: Original strand, 5140018 - 5140113
Alignment:
Q  114 tattgagtgaaagtcatgtgggtctcatcactttatgtgggtttcatttctaatgcgtgagacccacacgagtttcaccgaataagagagtgagtg 209  Q
    ||||| |||||| ||||| |||| ||| ||||||||||||| | |||||  |||| |||  ||||||| || ||||||  ||||||||||||||||    
T  5140018 tattgggtgaaactcatgcgggtttcaccactttatgtgggatccattttcaatgtgtggtacccacatgaatttcactcaataagagagtgagtg 5140113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 120 - 209
Target Start/End: Original strand, 37285169 - 37285258
Alignment:
Q  120 gtgaaagtcatgtgggtctcatcactttatgtgggtttcatttctaatgcgtgagacccacacgagtttcaccgaataagagagtgagtg 209  Q
    |||||| |||| || |||||||||||||| ||| | | |||||| |||| |||  ||||||| || ||||||| ||||| ||||||||||    
T  37285169 gtgaaactcatttgagtctcatcactttacgtgagatccatttccaatgtgtggtacccacatgaatttcacccaataaaagagtgagtg 37285258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 121 - 198
Target Start/End: Complemental strand, 42635433 - 42635356
Alignment:
Q  121 tgaaagtcatgtgggtctcatcactttatgtgggtttcatttctaatgcgtgagacccacacgagtttcaccgaataa 198  Q
    ||||| |||||||||||||||||||||||||||  | |||||  |||| |||  ||||||| || ||||||| |||||    
T  42635433 tgaaactcatgtgggtctcatcactttatgtggaatccattttcaatgtgtggtacccacatgaatttcacccaataa 42635356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0922 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0922
Description:

Target: scaffold0922; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 121 - 209
Target Start/End: Complemental strand, 791 - 703
Alignment:
Q  121 tgaaagtcatgtgggtctcatcactttatgtgggtttcatttctaatgcgtgagacccacacgagtttcaccgaataagagagtgagtg 209  Q
    ||||| |||||||||||||| ||||||||||||| | |||||  |||| |||  | ||||| || ||||||  |||||||||| |||||    
T  791 tgaaactcatgtgggtctcaccactttatgtgggatccattttcaatgtgtggtatccacatgaatttcactcaataagagagcgagtg 703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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