View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18272_high_33 (Length: 228)
Name: NF18272_high_33
Description: NF18272
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18272_high_33 |
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Alignment Details
Target: chr1 (Bit Score: 178; Significance: 4e-96; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 1 - 212
Target Start/End: Complemental strand, 15329040 - 15328832
Alignment:
| Q |
1 |
aaggatgcaaaagtattaagaaaaagtcttaatagctaaggttagaactaattaaaagttaaaacatggcattgtgactattcaatagctaccttgccaa |
100 |
Q |
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| T |
15329040 |
aaggaagcaaaagtattaagaaagagtcttaatagctaaggttagaactaataaaaagttaaaacatggcattgtgactattcaatagctaccttgccaa |
15328941 |
T |
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| Q |
101 |
ttcaaattgggaatggttatttaggttccctacgacctaaaaatactgatttaaagtggtatgctgctaagttttagcagcagactttgagcataactca |
200 |
Q |
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| T |
15328940 |
ttcaaattggaaatggttatttaggttccctacgacctcaaaatactgatttaaagtggta---tgctaagttttagcagcagactttgagcataactca |
15328844 |
T |
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| Q |
201 |
aagtgacactac |
212 |
Q |
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|||||||||||| |
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| T |
15328843 |
aagtgacactac |
15328832 |
T |
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