View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18272_high_35 (Length: 218)
Name: NF18272_high_35
Description: NF18272
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18272_high_35 |
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Alignment Details
Target: chr4 (Bit Score: 100; Significance: 1e-49; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 8 - 127
Target Start/End: Complemental strand, 9452601 - 9452482
Alignment:
| Q |
8 |
atgtcgaagaatatatagatgtaagtaattaagccagagtagtgaattttacgaaaagatgtaaatgatagagttcattgcaatcagaatattaaacaat |
107 |
Q |
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| T |
9452601 |
atgtctaaaaatatatagatgtaagtaattaagccagagtagtgaattttacgaaaacatgtaaatgatagagttcattgcattcagaatattaaataat |
9452502 |
T |
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| Q |
108 |
agcaatgtctaaaaacaaag |
127 |
Q |
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| T |
9452501 |
agcaatgtctaaaaacaaag |
9452482 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 130 - 199
Target Start/End: Complemental strand, 9452203 - 9452134
Alignment:
| Q |
130 |
ataataattagtaattcaagaaaaaatgttcagaacattgctctatcaaaatcctttgttatttcctttt |
199 |
Q |
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| T |
9452203 |
ataataattagtaattcaagaaaaaatgttcagaacattgctctatcaaaatctttttttatttcctttt |
9452134 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 91; Significance: 3e-44; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 17 - 127
Target Start/End: Original strand, 21546886 - 21546996
Alignment:
| Q |
17 |
aatatatagatgtaagtaattaagccagagtagtgaattttacgaaaagatgtaaatgatagagttcattgcaatcagaatattaaacaatagcaatgtc |
116 |
Q |
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| T |
21546886 |
aatatatagatgtaagtaattaagctagagtagtgaattttacgaaaacatgtaaatgatagagttcattgcattcagaatattaaataatagcaatgtc |
21546985 |
T |
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| Q |
117 |
taaaaacaaag |
127 |
Q |
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| T |
21546986 |
tacaaacaaag |
21546996 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 130 - 198
Target Start/End: Original strand, 21547276 - 21547345
Alignment:
| Q |
130 |
ataataattagtaattcaagaaaa-aatgttcagaacattgctctatcaaaatcctttgttatttccttt |
198 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||| |||||| |||||| |||| |
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| T |
21547276 |
ataataattagtaattcaagaaaaaaatgttcagaacattgctctatcaaattccttttttatttacttt |
21547345 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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