View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18272_high_6 (Length: 592)

Name: NF18272_high_6
Description: NF18272
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18272_high_6
NF18272_high_6
[»] chr4 (40 HSPs)
chr4 (19-390)||(2547159-2547530)
chr4 (388-578)||(2546797-2546987)
chr4 (194-326)||(5035301-5035433)
chr4 (276-343)||(2546806-2546873)
chr4 (193-328)||(2621399-2621534)
chr4 (194-328)||(2533990-2534124)
chr4 (203-327)||(2381637-2381761)
chr4 (205-328)||(2518910-2519033)
chr4 (58-182)||(2376334-2376458)
chr4 (194-334)||(2490799-2490939)
chr4 (203-326)||(2391265-2391388)
chr4 (193-332)||(2471729-2471868)
chr4 (502-569)||(2547206-2547273)
chr4 (194-328)||(2467219-2467356)
chr4 (201-328)||(2393837-2393963)
chr4 (276-328)||(5106633-5106685)
chr4 (276-327)||(2367982-2368033)
chr4 (229-328)||(2525432-2525531)
chr4 (224-326)||(12124524-12124626)
chr4 (276-326)||(2373548-2373598)
chr4 (201-327)||(2380371-2380497)
chr4 (194-250)||(2486062-2486118)
chr4 (502-550)||(2621482-2621530)
chr4 (289-328)||(2363167-2363206)
chr4 (201-256)||(2382745-2382800)
chr4 (203-258)||(2482527-2482582)
chr4 (289-328)||(2625591-2625630)
chr4 (495-550)||(5106626-5106681)
chr4 (193-263)||(2361199-2361269)
chr4 (500-550)||(2367980-2368030)
chr4 (500-550)||(2518914-2518964)
chr4 (501-550)||(2391337-2391386)
chr4 (501-558)||(2471729-2471786)
chr4 (194-239)||(2477352-2477397)
chr4 (501-550)||(5035303-5035352)
chr4 (478-550)||(2381686-2381758)
chr4 (276-328)||(2460283-2460335)
chr4 (501-549)||(2467224-2467272)
chr4 (394-445)||(2546682-2546734)
chr4 (227-259)||(12126647-12126679)
[»] chr8 (1 HSPs)
chr8 (293-327)||(18314729-18314763)
[»] chr5 (1 HSPs)
chr5 (289-327)||(28673360-28673398)
[»] chr7 (2 HSPs)
chr7 (192-260)||(10169040-10169108)
chr7 (192-260)||(10176565-10176633)


Alignment Details
Target: chr4 (Bit Score: 344; Significance: 0; HSPs: 40)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 19 - 390
Target Start/End: Complemental strand, 2547530 - 2547159
Alignment:
Q  19 acaatctccagtcagatcatcctttcccttcctcacttcttccaaaggttccctaacatcacatcactcgacctcacacacttatctcgagacattgacc 118  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  2547530 acaatctccagtcatatcatcctttcccttcctcacttcttccaaaggttccctaacatcacatcactcgacctcacacacttatcccgagacattgacc 2547431  T
Q  119 ttaacacacttcttaccctaatctccactctccctataaacgtcaaatcactctatctctccaaccgtaccatcattcctgcaaatgggttgcgagcttt 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  2547430 ttaacacacttcttaccctaatctccactctccctataaacgtcaaatcactctatctctccaacagtaccatcattcctgcaaatgggttgcgagcttt 2547331  T
Q  219 gtctgaaaagatgaaaaatttgacgtctctcatttgttccgaaatcacctttatcagcaagaatgatttattcttcattgctgattgtttccctttactc 318  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  2547330 gtctgaaaagatgaaaaatttgacgtctctcatttgttccaaaatcacctttatcagcaagaatgatttattcttcattgctgattgtttccctttactt 2547231  T
Q  319 gaagaactcaccctaatggaagaatacgctccctaccgttctatagctatttttagtagcagtgattttgtg 390  Q
    ||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||    
T  2547230 gaagaactcaccctaatggaagaatacactccccaccgttctatagctatttttagtagcagtgattttgtg 2547159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 179; E-Value: 3e-96
Query Start/End: Original strand, 388 - 578
Target Start/End: Complemental strand, 2546987 - 2546797
Alignment:
Q  388 gtgatagatgatgatcgattcttgacacttcccaaaatccctaatatttgtttatatgttcacttctttgaagaatttcccgactctcaattgttctgag 487  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||    
T  2546987 gtgatagatgatgatcgattcttgacacttcccaaaatccctaatatttgtttatatgttaacttatttgaagaatttcccgactctcaattgttctgag 2546888  T
Q  488 attacttgtgtacacaagaatgatttattcttcattgttgattgttttcctttactcgaagaattcaccctgatggaagaattcaaccccc 578  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2546887 attacttgtgtacacaagaatgatttattcttcattgctgattgttttcctttactcgaagaattcaccctgatggaagaattcaaccccc 2546797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 194 - 326
Target Start/End: Complemental strand, 5035433 - 5035301
Alignment:
Q  194 ttcctgcaaatgggttgcgagctttgtctgaaaagatgaaaaatttgacgtctctcatttgttccgaaatcacctttatcagcaagaatgatttattctt 293  Q
    |||||| ||||| ||||||||||||||| || |||||||||| ||| |||||||||  |||||   |||| |  ||||||| |||||||||| | |||||    
T  5035433 ttcctgaaaatgagttgcgagctttgtccgagaagatgaaaagtttaacgtctctcgcttgttatcaaatgagatttatcaacaagaatgatcttttctt 5035334  T
Q  294 cattgctgattgtttccctttactcgaagaact 326  Q
     ||||||||||||||||||||||||||||||||    
T  5035333 gattgctgattgtttccctttactcgaagaact 5035301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 276 - 343
Target Start/End: Complemental strand, 2546873 - 2546806
Alignment:
Q  276 caagaatgatttattcttcattgctgattgtttccctttactcgaagaactcaccctaatggaagaat 343  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||| ||||||||||    
T  2546873 caagaatgatttattcttcattgctgattgttttcctttactcgaagaattcaccctgatggaagaat 2546806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 193 - 328
Target Start/End: Original strand, 2621399 - 2621534
Alignment:
Q  193 attcctgcaaatgggttgcgagctttgtctgaaaagatgaaaaatttgacgtctctcatttgttccgaaatcacctttatcagcaagaatgatttattct 292  Q
    |||||| || |||||||||||||||| ||  |||| |||||||||||||| ||||||| ||||| |  ||| |     ||| ||||||||||| ||||||    
T  2621399 attcctacagatgggttgcgagctttctccaaaaatatgaaaaatttgacatctctcacttgttaccgaattaataaaatccgcaagaatgatctattct 2621498  T
Q  293 tcattgctgattgtttccctttactcgaagaactca 328  Q
    || |||||||||||||||||||||||||||||||||    
T  2621499 tccttgctgattgtttccctttactcgaagaactca 2621534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 194 - 328
Target Start/End: Complemental strand, 2534124 - 2533990
Alignment:
Q  194 ttcctgcaaatgggttgcgagctttgtctgaaaagatgaaaaatttgacgtctctcatttgttccgaaatcacctttatcagcaagaatgatttattctt 293  Q
    |||||| ||||| ||| |||||||||||  | |||||||||||||| || ||||||| |||||   |||| | || ||||| |||||||||| | |||||    
T  2534124 ttcctgaaaatgagttccgagctttgtccaagaagatgaaaaatttaacatctctcacttgttatcaaatgagctatatcaacaagaatgatctcttctt 2534025  T
Q  294 cattgctgattgtttccctttactcgaagaactca 328  Q
     ||||||||||||||||||||||| ||||||||||    
T  2534024 gattgctgattgtttccctttacttgaagaactca 2533990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 203 - 327
Target Start/End: Original strand, 2381637 - 2381761
Alignment:
Q  203 atgggttgcgagctttgtctgaaaagatgaaaaatttgacgtctctcatttgttccgaaatcacctttatcagcaagaatgatttattcttcattgctga 302  Q
    ||||||| |||||||||||  ||||||||||||||||||| ||||| | |||||| ||||| || |  |||| |||||| ||||| || |||||||  ||    
T  2381637 atgggttccgagctttgtccaaaaagatgaaaaatttgacctctcttacttgttctgaaattacttggatcaacaagaaggatttcttattcattgtcga 2381736  T
Q  303 ttgtttccctttactcgaagaactc 327  Q
    ||| |||||||||||||||||||||    
T  2381737 ttgcttccctttactcgaagaactc 2381761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 205 - 328
Target Start/End: Complemental strand, 2519033 - 2518910
Alignment:
Q  205 gggttgcgagctttgtctgaaaagatgaaaaatttgacgtctctcatttgttccgaaatcacctttatcagcaagaatgatttattcttcattgctgatt 304  Q
    ||||||| |||||||||| |||| |||||||||||||| | ||||| |||||   |||| |  | ||||  |||||||||| | ||||||||||||||||    
T  2519033 gggttgcaagctttgtctcaaaacatgaaaaatttgacatatctcacttgttattaaatgaaatatatccacaagaatgatctcttcttcattgctgatt 2518934  T
Q  305 gtttccctttactcgaagaactca 328  Q
    |||||||||||||| |||||||||    
T  2518933 gtttccctttactcaaagaactca 2518910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 58 - 182
Target Start/End: Original strand, 2376334 - 2376458
Alignment:
Q  58 ttccaaaggttccctaacatcacatcactcgacctcacacacttatctcgagacattgaccttaacacacttcttaccctaatctccactctccctataa 157  Q
    |||| ||||||||||||||||||||| ||||||||||||||||| |||||||  | ||||||  || | ||| |||||| |||||||||| ||||| ||     
T  2376334 ttccgaaggttccctaacatcacatccctcgacctcacacacttttctcgagtgagtgacctcgacgctcttgttacccaaatctccactttccctttag 2376433  T
Q  158 acgtcaaatcactctatctctccaa 182  Q
    || ||||||   |||||||||||||    
T  2376434 acctcaaattgatctatctctccaa 2376458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 194 - 334
Target Start/End: Complemental strand, 2490939 - 2490799
Alignment:
Q  194 ttcctgcaaatgggttgcgagctttgtctgaaaagatgaaaaatttgacgtctctcatttgttccgaaatcacctttatcagcaagaatgatttattctt 293  Q
    |||| |||||||  |||||||||||||| |  | ||||||||||||||| ||||||| |||||    ||| |  ||||||| |||||||||| | || ||    
T  2490939 ttcccgcaaatgaattgcgagctttgtccgggacgatgaaaaatttgacatctctcacttgttatcgaatgaggtttatcaacaagaatgatctcttttt 2490840  T
Q  294 cattgctgattgtttccctttactcgaagaactcaccctaa 334  Q
     |||||||||||||||||||||||||| ||||||| |||||    
T  2490839 tattgctgattgtttccctttactcgacgaactcatcctaa 2490799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 203 - 326
Target Start/End: Original strand, 2391265 - 2391388
Alignment:
Q  203 atgggttgcgagctttgtctgaaaagatgaaaaatttgacgtctctcatttgttccgaaatcacctttatcagcaagaatgatttattcttcattgctga 302  Q
    ||||||| |||||||||||  ||||||||||||||||||| ||||| | |||||||||| |    |  |||| |||||| ||| | |||||||||| |||    
T  2391265 atgggttccgagctttgtccaaaaagatgaaaaatttgacctctcttacttgttccgaatttttttggatcaacaagaaggatatcttcttcattgttga 2391364  T
Q  303 ttgtttccctttactcgaagaact 326  Q
    ||| ||||||||||||||||||||    
T  2391365 ttgcttccctttactcgaagaact 2391388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 193 - 332
Target Start/End: Complemental strand, 2471868 - 2471729
Alignment:
Q  193 attcctgcaaatgggttgcgagctttgtctgaaaagatgaaaaatttgacgtctctcatttgttccgaaatcacctttatcagcaagaatgatttattct 292  Q
    ||||||| | |||| ||||||||| |||||||||||||||| || ||||| ||||| | ||||||| || | |  | ||||  ||||||| || | ||||    
T  2471868 attcctgaagatggattgcgagctctgtctgaaaagatgaagaaattgacatctctaaattgttccaaagttaattatatcgacaagaatcatctcttct 2471769  T
Q  293 tcattgctgattgtttccctttactcgaagaactcaccct 332  Q
    | || ||||||||||| |||||||||||||||||||||||    
T  2471768 tgatagctgattgttttcctttactcgaagaactcaccct 2471729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 502 - 569
Target Start/End: Complemental strand, 2547273 - 2547206
Alignment:
Q  502 caagaatgatttattcttcattgttgattgttttcctttactcgaagaattcaccctgatggaagaat 569  Q
    ||||||||||||||||||||||| ||||||||| |||||||| |||||| ||||||| ||||||||||    
T  2547273 caagaatgatttattcttcattgctgattgtttccctttacttgaagaactcaccctaatggaagaat 2547206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 194 - 328
Target Start/End: Complemental strand, 2467356 - 2467219
Alignment:
Q  194 ttcctgcaaatgggttgcgagctttgtctgaaaagatgaaaaatttgacgtctctcatttgttccgaaatcaccttt---atcagcaagaatgatttatt 290  Q
    |||||||| |||||||||||||||| ||  || |||||||||||||||| || |||| ||||| |  |||  | |||   |||  |||||| ||| | ||    
T  2467356 ttcctgcagatgggttgcgagctttctccaaagagatgaaaaatttgacatcactcacttgttaccgaattgcttttgatatcgacaagaacgatctttt 2467257  T
Q  291 cttcattgctgattgtttccctttactcgaagaactca 328  Q
    ||||||||||||||||||||||||||||||||| ||||    
T  2467256 cttcattgctgattgtttccctttactcgaagagctca 2467219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 201 - 328
Target Start/End: Original strand, 2393837 - 2393963
Alignment:
Q  201 aaatgggttgcgagctttgtctgaaaagatgaaaaa-tttgacgtctctcatttgttccgaaatcacctttatcagcaagaatgatttattcttcattgc 299  Q
    |||||||||||||||||||||  ||||||||||||| |||||| |||||||  |  ||  |||| ||  ||||| ||||||||| | | || ||||||||    
T  2393837 aaatgggttgcgagctttgtcccaaaagatgaaaaaatttgacatctctcacat--tctaaaatgactattatctgcaagaatggtctctttttcattgc 2393934  T
Q  300 tgattgtttccctttactcgaagaactca 328  Q
    ||||| ||||||||||||| |||||||||    
T  2393935 tgattttttccctttactccaagaactca 2393963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 276 - 328
Target Start/End: Original strand, 5106633 - 5106685
Alignment:
Q  276 caagaatgatttattcttcattgctgattgtttccctttactcgaagaactca 328  Q
    ||||| |||| | ||||||||||||||||||||||||||||||||||||||||    
T  5106633 caagagtgatctcttcttcattgctgattgtttccctttactcgaagaactca 5106685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 276 - 327
Target Start/End: Original strand, 2367982 - 2368033
Alignment:
Q  276 caagaatgatttattcttcattgctgattgtttccctttactcgaagaactc 327  Q
    ||||| |||| | |||||||||||||||||||||||||||||||||||||||    
T  2367982 caagagtgatctcttcttcattgctgattgtttccctttactcgaagaactc 2368033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 229 - 328
Target Start/End: Complemental strand, 2525531 - 2525432
Alignment:
Q  229 atgaaaaatttgacgtctctcatttgttccgaaatcacctttatcagcaagaatgatttattcttcattgctgattgtttccctttactcgaagaactca 328  Q
    |||||||||||||| ||||||| |||||   || | |  ||||| | |||||||||| |  ||||||||||||||||||||||| |||||||||||||||    
T  2525531 atgaaaaatttgacatctctcacttgttatcaactgagatttattaacaagaatgatctgctcttcattgctgattgtttccctctactcgaagaactca 2525432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 224 - 326
Target Start/End: Complemental strand, 12124626 - 12124524
Alignment:
Q  224 aaaagatgaaaaatttgacgtctctcatttgttccgaaatcacctttatcagcaagaatgatttattcttcattgctgattgtttccctttactcgaaga 323  Q
    ||||||||||||||||||| ||||||| |||||||  ||| |  | |||    |||| |||| | ||||||||||||||||||||||||||||| |||||    
T  12124626 aaaagatgaaaaatttgacctctctcacttgttccagaatgatttgtatgctaaagagtgatctcttcttcattgctgattgtttccctttactagaaga 12124527  T
Q  324 act 326  Q
    |||    
T  12124526 act 12124524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 276 - 326
Target Start/End: Original strand, 2373548 - 2373598
Alignment:
Q  276 caagaatgatttattcttcattgctgattgtttccctttactcgaagaact 326  Q
    ||||| |||| | |||||||||||||||||||||||||| |||||||||||    
T  2373548 caagagtgatctcttcttcattgctgattgtttccctttgctcgaagaact 2373598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 201 - 327
Target Start/End: Original strand, 2380371 - 2380497
Alignment:
Q  201 aaatgggttgcgagctttgtctgaaaagatgaaaaatttgacgtctctcatttgttccgaaatcacctttatcagcaagaatgatttattcttcattgct 300  Q
    |||||| |||||| |||||||  ||||||||||||||||||| ||| |||| |||| | |||| || |  ||||  ||||| ||| | | ||||||||||    
T  2380371 aaatggattgcgacctttgtccaaaaagatgaaaaatttgacttctttcatgtgtttcaaaattacttggatcaataagaaggatatttacttcattgct 2380470  T
Q  301 gattgtttccctttactcgaagaactc 327  Q
    ||||| ||||||| ||| |||| ||||    
T  2380471 gattgcttcccttcacttgaagtactc 2380497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 194 - 250
Target Start/End: Complemental strand, 2486118 - 2486062
Alignment:
Q  194 ttcctgcaaatgggttgcgagctttgtctgaaaagatgaaaaatttgacgtctctca 250  Q
    ||||||||||||   |||||||||||||  ||||||||||||||||||| |||||||    
T  2486118 ttcctgcaaatgctctgcgagctttgtccaaaaagatgaaaaatttgacatctctca 2486062  T

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Target: chr4; HSP #23
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 502 - 550
Target Start/End: Original strand, 2621482 - 2621530
Alignment:
Q  502 caagaatgatttattcttcattgttgattgttttcctttactcgaagaa 550  Q
    |||||||||| |||||||| ||| ||||||||| |||||||||||||||    
T  2621482 caagaatgatctattcttccttgctgattgtttccctttactcgaagaa 2621530  T

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Target: chr4; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 289 - 328
Target Start/End: Original strand, 2363167 - 2363206
Alignment:
Q  289 ttcttcattgctgattgtttccctttactcgaagaactca 328  Q
    |||||||||||||||||||||||||| ||||| |||||||    
T  2363167 ttcttcattgctgattgtttccctttcctcgacgaactca 2363206  T

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Target: chr4; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 201 - 256
Target Start/End: Original strand, 2382745 - 2382800
Alignment:
Q  201 aaatgggttgcgagctttgtctgaaaagatgaaaaatttgacgtctctcatttgtt 256  Q
    |||||| ||||||||||||||  ||||||||||||| ||||| ||| |||||||||    
T  2382745 aaatggattgcgagctttgtccaaaaagatgaaaaaattgacttctttcatttgtt 2382800  T

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Target: chr4; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 203 - 258
Target Start/End: Complemental strand, 2482582 - 2482527
Alignment:
Q  203 atgggttgcgagctttgtctgaaaagatgaaaaatttgacgtctctcatttgttcc 258  Q
    |||||||| ||||| | ||| ||||||||||||||||||| ||||||| |||||||    
T  2482582 atgggttgagagctctatctaaaaagatgaaaaatttgacatctctcacttgttcc 2482527  T

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Target: chr4; HSP #27
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 289 - 328
Target Start/End: Original strand, 2625591 - 2625630
Alignment:
Q  289 ttcttcattgctgattgtttccctttactcgaagaactca 328  Q
    ||||| |||| |||||||||||||||||||||||||||||    
T  2625591 ttctttattgttgattgtttccctttactcgaagaactca 2625630  T

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Target: chr4; HSP #28
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 495 - 550
Target Start/End: Original strand, 5106626 - 5106681
Alignment:
Q  495 gtgtacacaagaatgatttattcttcattgttgattgttttcctttactcgaagaa 550  Q
    ||||| |||||| |||| | |||||||||| ||||||||| |||||||||||||||    
T  5106626 gtgtagacaagagtgatctcttcttcattgctgattgtttccctttactcgaagaa 5106681  T

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Target: chr4; HSP #29
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 193 - 263
Target Start/End: Original strand, 2361199 - 2361269
Alignment:
Q  193 attcctgcaaatgggttgcgagctttgtctgaaaagatgaaaaatttgacgtctctcatttgttccgaaat 263  Q
    |||||| ||| |||| | |||||||||||  |||| |||||||||||||| ||||||| ||||||| ||||    
T  2361199 attcctacaagtgggctacgagctttgtccaaaaaaatgaaaaatttgacatctctcacttgttccaaaat 2361269  T

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Target: chr4; HSP #30
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 500 - 550
Target Start/End: Original strand, 2367980 - 2368030
Alignment:
Q  500 cacaagaatgatttattcttcattgttgattgttttcctttactcgaagaa 550  Q
    ||||||| |||| | |||||||||| ||||||||| |||||||||||||||    
T  2367980 cacaagagtgatctcttcttcattgctgattgtttccctttactcgaagaa 2368030  T

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Target: chr4; HSP #31
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 500 - 550
Target Start/End: Complemental strand, 2518964 - 2518914
Alignment:
Q  500 cacaagaatgatttattcttcattgttgattgttttcctttactcgaagaa 550  Q
    |||||||||||| | |||||||||| ||||||||| ||||||||| |||||    
T  2518964 cacaagaatgatctcttcttcattgctgattgtttccctttactcaaagaa 2518914  T

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Target: chr4; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 501 - 550
Target Start/End: Original strand, 2391337 - 2391386
Alignment:
Q  501 acaagaatgatttattcttcattgttgattgttttcctttactcgaagaa 550  Q
    ||||||| ||| | ||||||||||||||||| || |||||||||||||||    
T  2391337 acaagaaggatatcttcttcattgttgattgcttccctttactcgaagaa 2391386  T

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Target: chr4; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 501 - 558
Target Start/End: Complemental strand, 2471786 - 2471729
Alignment:
Q  501 acaagaatgatttattcttcattgttgattgttttcctttactcgaagaattcaccct 558  Q
    |||||||| || | ||||| || | ||||||||||||||||||||||||| |||||||    
T  2471786 acaagaatcatctcttcttgatagctgattgttttcctttactcgaagaactcaccct 2471729  T

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Target: chr4; HSP #34
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 194 - 239
Target Start/End: Complemental strand, 2477397 - 2477352
Alignment:
Q  194 ttcctgcaaatgggttgcgagctttgtctgaaaagatgaaaaattt 239  Q
    |||||| |||||||||| ||||||||||  ||||||||||||||||    
T  2477397 ttcctgtaaatgggttgagagctttgtcaaaaaagatgaaaaattt 2477352  T

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Target: chr4; HSP #35
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 501 - 550
Target Start/End: Complemental strand, 5035352 - 5035303
Alignment:
Q  501 acaagaatgatttattcttcattgttgattgttttcctttactcgaagaa 550  Q
    ||||||||||| | ||||| |||| ||||||||| |||||||||||||||    
T  5035352 acaagaatgatcttttcttgattgctgattgtttccctttactcgaagaa 5035303  T

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Target: chr4; HSP #36
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 478 - 550
Target Start/End: Original strand, 2381686 - 2381758
Alignment:
Q  478 ttgttctgagattacttgtgtacacaagaatgatttattcttcattgttgattgttttcctttactcgaagaa 550  Q
    ||||||||| ||||||||  |  ||||||| ||||| || |||||||| ||||| || |||||||||||||||    
T  2381686 ttgttctgaaattacttggatcaacaagaaggatttcttattcattgtcgattgcttccctttactcgaagaa 2381758  T

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Target: chr4; HSP #37
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 276 - 328
Target Start/End: Complemental strand, 2460335 - 2460283
Alignment:
Q  276 caagaatgatttattcttcattgctgattgtttccctttactcgaagaactca 328  Q
    ||||||| || | ||||| |||||||||||||| || ||||||||||||||||    
T  2460335 caagaatcatctcttcttaattgctgattgttttccattactcgaagaactca 2460283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 501 - 549
Target Start/End: Complemental strand, 2467272 - 2467224
Alignment:
Q  501 acaagaatgatttattcttcattgttgattgttttcctttactcgaaga 549  Q
    ||||||| ||| | |||||||||| ||||||||| ||||||||||||||    
T  2467272 acaagaacgatcttttcttcattgctgattgtttccctttactcgaaga 2467224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 394 - 445
Target Start/End: Complemental strand, 2546734 - 2546682
Alignment:
Q  394 gatgatgatcgattcttgacacttcccaaaatccc-taatatttgtttatatg 445  Q
    ||||||||||||||||||  ||||||||||||||| ||  |||||||||||||    
T  2546734 gatgatgatcgattcttggtacttcccaaaatcccgtagcatttgtttatatg 2546682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 227 - 259
Target Start/End: Complemental strand, 12126679 - 12126647
Alignment:
Q  227 agatgaaaaatttgacgtctctcatttgttccg 259  Q
    |||||||||||||||| ||||||||||||||||    
T  12126679 agatgaaaaatttgacctctctcatttgttccg 12126647  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 293 - 327
Target Start/End: Original strand, 18314729 - 18314763
Alignment:
Q  293 tcattgctgattgtttccctttactcgaagaactc 327  Q
    |||||||||||||||||||||| ||||||||||||    
T  18314729 tcattgctgattgtttccctttgctcgaagaactc 18314763  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 289 - 327
Target Start/End: Original strand, 28673360 - 28673398
Alignment:
Q  289 ttcttcattgctgattgtttccctttactcgaagaactc 327  Q
    ||||||||||||||||| |||||||| ||||||||||||    
T  28673360 ttcttcattgctgattgcttccctttgctcgaagaactc 28673398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 29; Significance: 0.0000008; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 192 - 260
Target Start/End: Original strand, 10169040 - 10169108
Alignment:
Q  192 cattcctgcaaatgggttgcgagctttgtctgaaaagatgaaaaatttgacgtctctcatttgttccga 260  Q
    |||||| |||||||||||||||| ||| ||| |||| || | || |||||| ||||||| |||||||||    
T  10169040 cattcccgcaaatgggttgcgagttttctctcaaaatattagaactttgacctctctcacttgttccga 10169108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 192 - 260
Target Start/End: Original strand, 10176565 - 10176633
Alignment:
Q  192 cattcctgcaaatgggttgcgagctttgtctgaaaagatgaaaaatttgacgtctctcatttgttccga 260  Q
    |||||| |||||||||||||||| ||| ||| |||| || | || |||||| ||||||| |||||||||    
T  10176565 cattcccgcaaatgggttgcgagttttctctcaaaatattagaactttgacctctctcacttgttccga 10176633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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