View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18272_high_8 (Length: 559)
Name: NF18272_high_8
Description: NF18272
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18272_high_8 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 466; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 466; E-Value: 0
Query Start/End: Original strand, 4 - 543
Target Start/End: Original strand, 1076842 - 1077375
Alignment:
| Q |
4 |
atgtcgaagaaaatgcttatccaagtaatcccatttcatgatatccttattgaatccaagaatgttggttccgcttagataccactgatgaagatgctat |
103 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1076842 |
atgtcaaagaaaatgcttatccaagtaatcccatttcatgatatccttattgaatccaagaatgttggttccgcttagataccactgatgaagatgctat |
1076941 |
T |
|
| Q |
104 |
atcttgtaggttgtcaatacccaaatatggaagacacgattaaataaagactttacatatcctaaatcgtgggtccannnnnnnnnnnnnnnnnnngctt |
203 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
1076942 |
atcttgtaggttgtcaatacccaaatatggaagacacaattaaataaagactttacatatcctaaatcgtgggtccatttttcttttttt------gctt |
1077035 |
T |
|
| Q |
204 |
aaatttagaagatacaagcaattaccatgtgtggctcaaaactcttcagtattggctactatacaattctttcctttacgagtatattttgactattcaa |
303 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1077036 |
aaatttagaagatacacgcaattaccatgtgtggctcaaaactcttcagtattggctactatacaattctttcctttacgagtatattttgactattcaa |
1077135 |
T |
|
| Q |
304 |
atatatattcccattttttctttcctcgttgcctcaaatcattccaaagacccacacttaacgacgtataaacaacgtaaccatgttcttaaattctttc |
403 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1077136 |
atatatattcccattttttctttcctcgttgcctcaaatcattccaaagacccacacttaacgacgtataaacaacgtaaccatgttcttaaattctttc |
1077235 |
T |
|
| Q |
404 |
aaaaaggaaaagtataatgcatcatcatcaacactattccatgttggtaagcaacgaatagatcatattagagaaattagtgtgatcatgtcaacactaa |
503 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1077236 |
aaaaaggaaaagtataatgcatcatcatcaacactattccatgttggtaagcaacgaatagatcatattagagaaattagtgtgatcatgtcaacactaa |
1077335 |
T |
|
| Q |
504 |
tagtctaatacaatctgaactctgcaataagtgtgtttaa |
543 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1077336 |
tagtctaatacaatctgaactctgcaataagtgtgtttaa |
1077375 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University