View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18272_low_1 (Length: 962)

Name: NF18272_low_1
Description: NF18272
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18272_low_1
NF18272_low_1
[»] chr8 (6 HSPs)
chr8 (347-945)||(42912781-42913377)
chr8 (13-320)||(42913403-42913710)
chr8 (597-661)||(8768560-8768624)
chr8 (615-661)||(1553406-1553452)
chr8 (615-661)||(19392144-19392190)
chr8 (616-661)||(12318126-12318171)
[»] chr4 (12 HSPs)
chr4 (349-540)||(18302581-18302773)
chr4 (98-317)||(18302805-18303026)
chr4 (385-540)||(18032298-18032454)
chr4 (580-661)||(18302374-18302455)
chr4 (580-661)||(18032090-18032172)
chr4 (13-90)||(18303154-18303236)
chr4 (610-661)||(48851412-48851463)
chr4 (98-168)||(18030417-18030492)
chr4 (615-661)||(29323129-29323175)
chr4 (615-661)||(31068133-31068179)
chr4 (615-661)||(49626319-49626365)
chr4 (612-661)||(13871789-13871836)
[»] chr3 (13 HSPs)
chr3 (349-540)||(13234747-13234939)
chr3 (98-317)||(13234971-13235192)
chr3 (580-661)||(13234540-13234621)
chr3 (13-90)||(13235320-13235402)
chr3 (610-661)||(35097384-35097435)
chr3 (615-661)||(6117054-6117100)
chr3 (615-661)||(38441610-38441656)
chr3 (615-661)||(40811379-40811425)
chr3 (615-661)||(40816279-40816325)
chr3 (615-661)||(42344734-42344780)
chr3 (615-661)||(51830969-51831015)
chr3 (615-661)||(20551382-20551428)
chr3 (615-660)||(10266121-10266166)
[»] chr7 (20 HSPs)
chr7 (349-540)||(6944317-6944509)
chr7 (98-317)||(6944063-6944285)
chr7 (349-539)||(23059677-23059868)
chr7 (346-530)||(39182923-39183108)
chr7 (787-941)||(40765238-40765392)
chr7 (426-540)||(5268063-5268177)
chr7 (580-661)||(5268297-5268378)
chr7 (580-661)||(6944635-6944716)
chr7 (213-317)||(39182790-39182894)
chr7 (13-90)||(6943853-6943935)
chr7 (13-90)||(9935846-9935928)
chr7 (603-661)||(30129136-30129194)
chr7 (21-90)||(5598563-5598637)
chr7 (615-661)||(12173140-12173186)
chr7 (615-661)||(21908146-21908192)
chr7 (615-661)||(29104996-29105042)
chr7 (615-661)||(3223662-3223708)
chr7 (615-661)||(21981985-21982031)
chr7 (615-661)||(37080402-37080448)
chr7 (682-735)||(40765390-40765443)
[»] chr2 (14 HSPs)
chr2 (385-540)||(37874933-37875089)
chr2 (98-188)||(11936112-11936204)
chr2 (410-528)||(17535392-17535510)
chr2 (580-661)||(37874725-37874807)
chr2 (580-661)||(44511661-44511742)
chr2 (13-90)||(11936332-11936414)
chr2 (98-168)||(37873053-37873128)
chr2 (615-661)||(35833879-35833925)
chr2 (615-661)||(39164415-39164461)
chr2 (163-218)||(37869641-37869696)
chr2 (615-660)||(42632399-42632444)
chr2 (580-617)||(45194161-45194198)
chr2 (615-661)||(5156735-5156781)
chr2 (615-661)||(20912588-20912634)
[»] chr5 (4 HSPs)
chr5 (615-661)||(27426623-27426669)
chr5 (615-661)||(26719994-26720040)
chr5 (615-661)||(26989740-26989786)
chr5 (615-661)||(1949389-1949435)
[»] chr1 (7 HSPs)
chr1 (615-661)||(1823987-1824033)
chr1 (615-661)||(8263444-8263490)
chr1 (615-661)||(15232213-15232259)
chr1 (615-661)||(16028847-16028893)
chr1 (615-661)||(16291296-16291342)
chr1 (615-661)||(17202278-17202324)
chr1 (611-661)||(20015281-20015331)
[»] chr6 (4 HSPs)
chr6 (615-661)||(10130330-10130376)
chr6 (615-661)||(26241845-26241891)
chr6 (615-661)||(25312310-25312356)
chr6 (615-661)||(26199804-26199850)
[»] scaffold0017 (1 HSPs)
scaffold0017 (615-661)||(188913-188959)


Alignment Details
Target: chr8 (Bit Score: 541; Significance: 0; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 541; E-Value: 0
Query Start/End: Original strand, 347 - 945
Target Start/End: Complemental strand, 42913377 - 42912781
Alignment:
Q  347 gctaaaagattctaatcgcaaatgagaggatttattatgtagaaaaaggaagatagattcatattcacatacatacaaattatagaggaacaagaataat 446  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42913377 gctaaaagattttaatcgcaaatgagaggatttattatgtagaaaaaggaagatagattcatattcacatacatacaaattatagaggaacaagaataat 42913278  T
Q  447 ctctgattactttttgaaaaagtagaaatcgatttttggtagtaataaaactattccaattactaaaattataaagaaacaatcgtaataaatgnnnnnn 546  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          
T  42913277 ctctgattactttttgaaaa-gtagaaatcgatttttggtagtaataaaactattccaattactaaaattataaagaaacaatcgtaataaatgaaaaaa 42913179  T
Q  547 nggggcatctttataagattttatgatttctataaatggaatgaattgatctcaaatttttacaagattttatgatttctgcctcctctaaggaagagct 646  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42913178 -ggggcatctttataagattttatgatttctataaatggaatgaattgatctcaaatttttacaagattttatgatttctgcctcctctaaggaagagct 42913080  T
Q  647 taattctaggaaaaacttaaccatcctagaattagcatatataattcatatgcacccccgctcagtatcataataagtaaatcgcattttctaataacgc 746  Q
    |||||||||||||||||||||||||||||||||| ||||||||| ||||||| |||||||||||||||||||| ||||||||||||||||||||||||||    
T  42913079 taattctaggaaaaacttaaccatcctagaattaacatatataactcatatgtacccccgctcagtatcataacaagtaaatcgcattttctaataacgc 42912980  T
Q  747 atatgaatctaaatccttcttaatagtttgatatgtagtttttctcgatctctctttatttctaattctcgtctacactgcttactacgatggtagggct 846  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  42912979 atatgaatctaaatccttcttaatagtttgatatgtagtttttctcgatctctctttatttctaattctcgtctacactgcttactacgatggtaggact 42912880  T
Q  847 tctgtagttcttttcccaagcaccatagacatgttaaaataaaatatacaggatacatacctttgggacaagaacatccatagcagccactgtctctaa 945  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42912879 tctgtagttcttttcccaagcaccatagacatgttaaaataaaatatacaggatacatacctttgggacaagaacatccatagcagccactgtctctaa 42912781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 13 - 320
Target Start/End: Complemental strand, 42913710 - 42913403
Alignment:
Q  13 cagaccagcttactaataggatgccctaatacattacaaaatttcgctttagcatctaatcagaggaataattagaacataaaagaattggtttatattg 112  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42913710 cagaccggcttactaataggatgccctaatacattacaaaatttcgctttagcatctaatcagaggaataattagaacataaaagaattggtttatattg 42913611  T
Q  113 atcattcttggttgagaccgaacataaaaaaccttgccataaatgaataaaataatgtttccatttattcatcaaaaaaggtgaattcttcaaagccaga 212  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42913610 atcgttcttggttgagaccgaacataaaaaaccttgccataaatgaataaaataatgtttccatttattcatcaaaaaaggtgaattcttcaaagccaga 42913511  T
Q  213 atgcattttccttgacatttcacataatgaatgagaggatccttgaagaatgttaaagtatacgaagaatccttaacaaaaacttctacaagatgttcac 312  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| ||||||||||||||||||||||||    
T  42913510 atgcattttccttgacatttcacataatgaatgagaggatccttgaagaatgttaaactatacgaaaaatccttagcaaaaacttctacaagatgttcac 42913411  T
Q  313 tttttcat 320  Q
    ||||||||    
T  42913410 tttttcat 42913403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 597 - 661
Target Start/End: Original strand, 8768560 - 8768624
Alignment:
Q  597 ctcaaatttttacaagattttatgatttctgcctcctctaaggaagagcttaattctaggaaaaa 661  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  8768560 ctcaaatttttataagattttatgatttctgcctcctctaaggaagagcttaattctagaaaaaa 8768624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 615 - 661
Target Start/End: Original strand, 1553406 - 1553452
Alignment:
Q  615 tttatgatttctgcctcctctaaggaagagcttaattctaggaaaaa 661  Q
    |||||||||||| |||||||||||||| || ||||||||||||||||    
T  1553406 tttatgatttctacctcctctaaggaaaagtttaattctaggaaaaa 1553452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 615 - 661
Target Start/End: Complemental strand, 19392190 - 19392144
Alignment:
Q  615 tttatgatttctgcctcctctaaggaagagcttaattctaggaaaaa 661  Q
    ||||||||| || |||||||||||||| |||||||||||||||||||    
T  19392190 tttatgattactacctcctctaaggaaaagcttaattctaggaaaaa 19392144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 616 - 661
Target Start/End: Complemental strand, 12318171 - 12318126
Alignment:
Q  616 ttatgatttctgcctcctctaaggaagagcttaattctaggaaaaa 661  Q
    |||||||| || |||||||||||||| |||||||||||||||||||    
T  12318171 ttatgattactacctcctctaaggaaaagcttaattctaggaaaaa 12318126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 165; Significance: 9e-88; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 165; E-Value: 9e-88
Query Start/End: Original strand, 349 - 540
Target Start/End: Complemental strand, 18302773 - 18302581
Alignment:
Q  349 taaaagattctaatcgcaaatgagaggatttattatgtagaaaaaggaagatagattcatattcacatacatacaaattatagaggaacaagaataatct 448  Q
    ||||||||| |||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  18302773 taaaagattttaatcgtaaatgagaggatttattacgtagaaaaaggaagatagattcatattcacatacataaaaattatagaggaacaagaataatct 18302674  T
Q  449 ctgattactttttgaaaaagtagaaatcga-tttttggtagtaataaaactattccaattactaaaattataaagaaacaatcgtaataaatg 540  Q
    | |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18302673 cggattactttttgaaaaagtagaaatcgagtttttggtagtaataaaactattccaattactaaaattataaagaaacaatcgtaataaatg 18302581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 159; E-Value: 4e-84
Query Start/End: Original strand, 98 - 317
Target Start/End: Complemental strand, 18303026 - 18302805
Alignment:
Q  98 aattggtttatattgatcattcttggttgagaccgaacataaaaaa--ccttgccataaatgaataaaataatgtttccatttattcatcaaaaaaggtg 195  Q
    |||||||||||||| ||| ||||||||||||||| |||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  18303026 aattggtttatattcatcgttcttggttgagaccaaacataaaaaaaaccttgccataaatgaataaaataatgtttccatttattcatcaaaaaaggcg 18302927  T
Q  196 aattcttcaaagccagaatgcattttccttgacatttcacataatgaatgagaggatccttgaagaatgttaaagtatacgaagaatccttaacaaaaac 295  Q
    |||||||  ||||||||||| ||||||||||| || | ||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||    
T  18302926 aattctttgaagccagaatgtattttccttgatatctaacataatgaatgagaggatccttgaagaatgttaaagtatacgaaaaatccttagcaaaaac 18302827  T
Q  296 ttctacaagatgttcacttttt 317  Q
    ||||||||||||||| ||||||    
T  18302826 ttctacaagatgttctcttttt 18302805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 137; E-Value: 5e-71
Query Start/End: Original strand, 385 - 540
Target Start/End: Complemental strand, 18032454 - 18032298
Alignment:
Q  385 gtagaaaaaggaagatagattcatattcacatacatacaaattatagaggaacaagaataatctctgattactttttgaaaaagtagaaatcga-ttttt 483  Q
    ||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||    
T  18032454 gtagaaaaaggaagatagattaatattcacatacataaaaattatagaggaacaagaataatctcggattactttttgaaaaagtagaaatcgagttttt 18032355  T
Q  484 ggtagtaataaaactattccaattactaaaattataaagaaacaatcgtaataaatg 540  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18032354 ggtagtaataaaactattccaattactaaaattataaagaaacaatcgtaataaatg 18032298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 78; E-Value: 8e-36
Query Start/End: Original strand, 580 - 661
Target Start/End: Complemental strand, 18302455 - 18302374
Alignment:
Q  580 aaatggaatgaattgatctcaaatttttacaagattttatgatttctgcctcctctaaggaagagcttaattctaggaaaaa 661  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18302455 aaatggaatgaattgatctcaaatttttataagattttatgatttctgcctcctctaaggaagagcttaattctaggaaaaa 18302374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 580 - 661
Target Start/End: Complemental strand, 18032172 - 18032090
Alignment:
Q  580 aaatggaatgaattgatctcaaatttttac-aagattttatgatttctgcctcctctaaggaagagcttaattctaggaaaaa 661  Q
    |||||||||||||||||||||| |||||   |||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  18032172 aaatggaatgaattgatctcaatttttttttaagattttatgatttctgcctcctctaaggaagagcttaattctagaaaaaa 18032090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 13 - 90
Target Start/End: Complemental strand, 18303236 - 18303154
Alignment:
Q  13 cagaccagcttactaataggatgccctaatacattacaaaatttcgctttagc-----atctaatcagaggaataattagaac 90  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||     |||||||||||||||||||| ||||    
T  18303236 cagaccggcttactaataggatgccctaatacattacaaaatttcgctttagccaacgatctaatcagaggaataattggaac 18303154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 610 - 661
Target Start/End: Original strand, 48851412 - 48851463
Alignment:
Q  610 aagattttatgatttctgcctcctctaaggaagagcttaattctaggaaaaa 661  Q
    ||||||||  |||||| |||||||||||||||||||||||||||||||||||    
T  48851412 aagattttgagatttcagcctcctctaaggaagagcttaattctaggaaaaa 48851463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 98 - 168
Target Start/End: Complemental strand, 18030492 - 18030417
Alignment:
Q  98 aattggtttatattgatcattcttggttgagaccgaacataaaaaa----cctt-gccataaatgaataaaataat 168  Q
    |||||||||||||| ||| ||||||||||||||| |||||||||||    |||| |||||||||||||||||||||    
T  18030492 aattggtttatattcatcgttcttggttgagaccaaacataaaaaaaaaaccttagccataaatgaataaaataat 18030417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 615 - 661
Target Start/End: Original strand, 29323129 - 29323175
Alignment:
Q  615 tttatgatttctgcctcctctaaggaagagcttaattctaggaaaaa 661  Q
    |||||||||||| | |||||||||||| |||||||||||||||||||    
T  29323129 tttatgatttctacttcctctaaggaaaagcttaattctaggaaaaa 29323175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 615 - 661
Target Start/End: Original strand, 31068133 - 31068179
Alignment:
Q  615 tttatgatttctgcctcctctaaggaagagcttaattctaggaaaaa 661  Q
    |||||||||||| ||||||||| |||| |||||||||||||||||||    
T  31068133 tttatgatttctacctcctctagggaaaagcttaattctaggaaaaa 31068179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 615 - 661
Target Start/End: Original strand, 49626319 - 49626365
Alignment:
Q  615 tttatgatttctgcctcctctaaggaagagcttaattctaggaaaaa 661  Q
    |||||||||||| |||||||||||||| | |||||||||||||||||    
T  49626319 tttatgatttctacctcctctaaggaaaaacttaattctaggaaaaa 49626365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 612 - 661
Target Start/End: Complemental strand, 13871836 - 13871789
Alignment:
Q  612 gattttatgatttctgcctcctctaaggaagagcttaattctaggaaaaa 661  Q
    ||||||||||||||||||||||||||  | |||||||||||||| |||||    
T  13871836 gattttatgatttctgcctcctctaa--aggagcttaattctagaaaaaa 13871789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 165; Significance: 9e-88; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 165; E-Value: 9e-88
Query Start/End: Original strand, 349 - 540
Target Start/End: Complemental strand, 13234939 - 13234747
Alignment:
Q  349 taaaagattctaatcgcaaatgagaggatttattatgtagaaaaaggaagatagattcatattcacatacatacaaattatagaggaacaagaataatct 448  Q
    ||||||||| |||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  13234939 taaaagattttaatcgtaaatgagaggatttattacgtagaaaaaggaagatagattcatattcacatacataaaaattatagaggaacaagaataatct 13234840  T
Q  449 ctgattactttttgaaaaagtagaaatcga-tttttggtagtaataaaactattccaattactaaaattataaagaaacaatcgtaataaatg 540  Q
    | |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13234839 cggattactttttgaaaaagtagaaatcgagtttttggtagtaataaaactattccaattactaaaattataaagaaacaatcgtaataaatg 13234747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 159; E-Value: 4e-84
Query Start/End: Original strand, 98 - 317
Target Start/End: Complemental strand, 13235192 - 13234971
Alignment:
Q  98 aattggtttatattgatcattcttggttgagaccgaacataaaaaa--ccttgccataaatgaataaaataatgtttccatttattcatcaaaaaaggtg 195  Q
    |||||||||||||| ||| ||||||||||||||| |||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  13235192 aattggtttatattcatcgttcttggttgagaccaaacataaaaaaaaccttgccataaatgaataaaataatgtttccatttattcatcaaaaaaggcg 13235093  T
Q  196 aattcttcaaagccagaatgcattttccttgacatttcacataatgaatgagaggatccttgaagaatgttaaagtatacgaagaatccttaacaaaaac 295  Q
    |||||||  ||||||||||| ||||||||||| || | ||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||    
T  13235092 aattctttgaagccagaatgtattttccttgatatctaacataatgaatgagaggatccttgaagaatgttaaagtatacgaaaaatccttagcaaaaac 13234993  T
Q  296 ttctacaagatgttcacttttt 317  Q
    ||||||||||||||| ||||||    
T  13234992 ttctacaagatgttctcttttt 13234971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 78; E-Value: 8e-36
Query Start/End: Original strand, 580 - 661
Target Start/End: Complemental strand, 13234621 - 13234540
Alignment:
Q  580 aaatggaatgaattgatctcaaatttttacaagattttatgatttctgcctcctctaaggaagagcttaattctaggaaaaa 661  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13234621 aaatggaatgaattgatctcaaatttttataagattttatgatttctgcctcctctaaggaagagcttaattctaggaaaaa 13234540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 13 - 90
Target Start/End: Complemental strand, 13235402 - 13235320
Alignment:
Q  13 cagaccagcttactaataggatgccctaatacattacaaaatttcgctttagc-----atctaatcagaggaataattagaac 90  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||     |||||||||||||||||||| ||||    
T  13235402 cagaccggcttactaataggatgccctaatacattacaaaatttcgctttagccaacgatctaatcagaggaataattggaac 13235320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 610 - 661
Target Start/End: Complemental strand, 35097435 - 35097384
Alignment:
Q  610 aagattttatgatttctgcctcctctaaggaagagcttaattctaggaaaaa 661  Q
    ||||||||||||||||| |||||||||||||||||||||||||||| |||||    
T  35097435 aagattttatgatttctacctcctctaaggaagagcttaattctagaaaaaa 35097384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 615 - 661
Target Start/End: Original strand, 6117054 - 6117100
Alignment:
Q  615 tttatgatttctgcctcctctaaggaagagcttaattctaggaaaaa 661  Q
    |||||||||||| |||||||||||||| |||||||||||||||||||    
T  6117054 tttatgatttctacctcctctaaggaaaagcttaattctaggaaaaa 6117100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 615 - 661
Target Start/End: Complemental strand, 38441656 - 38441610
Alignment:
Q  615 tttatgatttctgcctcctctaaggaagagcttaattctaggaaaaa 661  Q
    |||||||||||| |||||||||||||| |||||||||||||||||||    
T  38441656 tttatgatttctacctcctctaaggaaaagcttaattctaggaaaaa 38441610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 615 - 661
Target Start/End: Complemental strand, 40811425 - 40811379
Alignment:
Q  615 tttatgatttctgcctcctctaaggaagagcttaattctaggaaaaa 661  Q
    |||||||||||| |||||||||||||| |||||||||||||||||||    
T  40811425 tttatgatttctacctcctctaaggaaaagcttaattctaggaaaaa 40811379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 615 - 661
Target Start/End: Complemental strand, 40816325 - 40816279
Alignment:
Q  615 tttatgatttctgcctcctctaaggaagagcttaattctaggaaaaa 661  Q
    |||||||||||| |||||||||||||| |||||||||||||||||||    
T  40816325 tttatgatttctacctcctctaaggaaaagcttaattctaggaaaaa 40816279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 615 - 661
Target Start/End: Complemental strand, 42344780 - 42344734
Alignment:
Q  615 tttatgatttctgcctcctctaaggaagagcttaattctaggaaaaa 661  Q
    |||||||||||| |||||||||||||| |||||||||||||||||||    
T  42344780 tttatgatttctacctcctctaaggaaaagcttaattctaggaaaaa 42344734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 615 - 661
Target Start/End: Complemental strand, 51831015 - 51830969
Alignment:
Q  615 tttatgatttctgcctcctctaaggaagagcttaattctaggaaaaa 661  Q
    |||||||||||| |||||||||||||| |||||||||||||||||||    
T  51831015 tttatgatttctacctcctctaaggaaaagcttaattctaggaaaaa 51830969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 615 - 661
Target Start/End: Original strand, 20551382 - 20551428
Alignment:
Q  615 tttatgatttctgcctcctctaaggaagagcttaattctaggaaaaa 661  Q
    |||||||||||| ||| |||||||||| |||||||||||||||||||    
T  20551382 tttatgatttctacctactctaaggaaaagcttaattctaggaaaaa 20551428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 615 - 660
Target Start/End: Complemental strand, 10266166 - 10266121
Alignment:
Q  615 tttatgatttctgcctcctctaaggaagagcttaattctaggaaaa 660  Q
    ||||||||| || |||||||||||||| ||||||||||||||||||    
T  10266166 tttatgattactacctcctctaaggaaaagcttaattctaggaaaa 10266121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 161; Significance: 2e-85; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 161; E-Value: 2e-85
Query Start/End: Original strand, 349 - 540
Target Start/End: Original strand, 6944317 - 6944509
Alignment:
Q  349 taaaagattctaatcgcaaatgagaggatttattatgtagaaaaaggaagatagattcatattcacatacatacaaattatagaggaacaagaataatct 448  Q
    ||||||||| |||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  6944317 taaaagattttaatcgtaaatgagaggatttattacgtagaaaaaggaagatagattcatattcacatacataaaaattatagaggaacaagaataatct 6944416  T
Q  449 ctgattactttttgaaaaagtagaaatcga-tttttggtagtaataaaactattccaattactaaaattataaagaaacaatcgtaataaatg 540  Q
    | ||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6944417 cggattactttttgaaaaagtagaaatagagtttttggtagtaataaaactattccaattactaaaattataaagaaacaatcgtaataaatg 6944509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 157; E-Value: 6e-83
Query Start/End: Original strand, 98 - 317
Target Start/End: Original strand, 6944063 - 6944285
Alignment:
Q  98 aattggtttatattgatcattcttggttgagaccgaacataaaa---aaccttgccataaatgaataaaataatgtttccatttattcatcaaaaaaggt 194  Q
    |||||||||||||| ||| ||||||||||||||| |||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  6944063 aattggtttatattcatcgttcttggttgagaccaaacataaaaaaaaaccttgccataaatgaataaaataatgtttccatttattcatcaaaaaaggc 6944162  T
Q  195 gaattcttcaaagccagaatgcattttccttgacatttcacataatgaatgagaggatccttgaagaatgttaaagtatacgaagaatccttaacaaaaa 294  Q
    ||||||||  ||||||||||| ||||||||||| || | ||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||    
T  6944163 gaattctttgaagccagaatgtattttccttgatatctaacataatgaatgagaggatccttgaagaatgttaaagtatacgaaaaatccttagcaaaaa 6944262  T
Q  295 cttctacaagatgttcacttttt 317  Q
    |||||||||||||||| ||||||    
T  6944263 cttctacaagatgttctcttttt 6944285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 152; E-Value: 5e-80
Query Start/End: Original strand, 349 - 539
Target Start/End: Original strand, 23059677 - 23059868
Alignment:
Q  349 taaaagattctaatcgcaaatgagaggatttattatgtagaaaaaggaagatagattcatattcacatacatacaaattatagaggaacaagaataatct 448  Q
    ||||||||| |||| | |||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||    
T  23059677 taaaagattttaatggtaaatgagaggatttattacgtagaaaaaggaagatagattcatattcacatacataaaaattatagaggaacaaaaataatct 23059776  T
Q  449 ctgattactttttgaaaaagtagaaatcg-atttttggtagtaataaaactattccaattactaaaattataaagaaacaatcgtaataaat 539  Q
    | ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  23059777 cggattactttttgaaaaagtagaaatcgaatttttggtagtaataaaactattccaattactaaaattctaaagaaacaatcgtaataaat 23059868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 146; E-Value: 2e-76
Query Start/End: Original strand, 346 - 530
Target Start/End: Original strand, 39182923 - 39183108
Alignment:
Q  346 cgctaaaagattctaatcgcaaatgagaggatttattatgtagaaaaaggaagatagattcatattcacatacatacaaattatagaggaacaagaataa 445  Q
    |||||||||||| |||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  39182923 cgctaaaagattttaatcgtaaatgagaggatttattacgtagaaaaaggaagatagattcatattcacatacataaaaattatagaggaacaagaataa 39183022  T
Q  446 tctctgattactttttgaaaaagtagaaatcg-atttttggtagtaataaaactattccaattactaaaattataaagaaacaatc 530  Q
    |||| ||||||||||||||||||||||||||| ||||||||||||||||| | |||||||||||||||||||||| ||||||||||    
T  39183023 tctcggattactttttgaaaaagtagaaatcgaatttttggtagtaataacattattccaattactaaaattatacagaaacaatc 39183108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 123; E-Value: 1e-62
Query Start/End: Original strand, 787 - 941
Target Start/End: Complemental strand, 40765392 - 40765238
Alignment:
Q  787 tttctcgatctctctttatttctaattctcgtctacactgcttactacgatggtagggcttctgtagttcttttcccaagcaccatagacatgttaaaat 886  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||| |||| ||||| ||||||||||||||||||||||||||||||||||||    
T  40765392 tttctcgatctctctttatttctaattctcgtctacactgcttactatgatgataggacttctatagttcttttcccaagcaccatagacatgttaaaat 40765293  T
Q  887 aaaatatacaggatacatacctttgggacaagaacatccatagcagccactgtct 941  Q
    |||| | |||| |||||||| ||||||||||||||||||||||||||||||||||    
T  40765292 aaaacaaacagaatacatacatttgggacaagaacatccatagcagccactgtct 40765238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 426 - 540
Target Start/End: Original strand, 5268063 - 5268177
Alignment:
Q  426 ttatagaggaacaagaataatctctgattactttttgaaaaagtagaaatcgatttttggtagtaataaaactattccaattactaaaattataaagaaa 525  Q
    |||||| ||||||||||||||||| ||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||    
T  5268063 ttatagcggaacaagaataatctcagattagtttttgaaaaagtagaaatcgattttttgtagtaataaaactattccaattactataattataaagaaa 5268162  T
Q  526 caatcgtaataaatg 540  Q
    ||| |||||||||||    
T  5268163 caaacgtaataaatg 5268177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 78; E-Value: 8e-36
Query Start/End: Original strand, 580 - 661
Target Start/End: Original strand, 5268297 - 5268378
Alignment:
Q  580 aaatggaatgaattgatctcaaatttttacaagattttatgatttctgcctcctctaaggaagagcttaattctaggaaaaa 661  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5268297 aaatggaatgaattgatctcaaatttttataagattttatgatttctgcctcctctaaggaagagcttaattctaggaaaaa 5268378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 78; E-Value: 8e-36
Query Start/End: Original strand, 580 - 661
Target Start/End: Original strand, 6944635 - 6944716
Alignment:
Q  580 aaatggaatgaattgatctcaaatttttacaagattttatgatttctgcctcctctaaggaagagcttaattctaggaaaaa 661  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6944635 aaatggaatgaattgatctcaaatttttataagattttatgatttctgcctcctctaaggaagagcttaattctaggaaaaa 6944716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 213 - 317
Target Start/End: Original strand, 39182790 - 39182894
Alignment:
Q  213 atgcattttccttgacatttcacataatgaatgagaggatccttgaagaatgttaaagtatacgaagaatccttaacaaaaacttctacaagatgttcac 312  Q
    ||||||||||||||| || | ||||||||||||||||||||||||| ||||||||||||||||||| |||||||| |||||||||||||||||||||| |    
T  39182790 atgcattttccttgatatctaacataatgaatgagaggatccttgaggaatgttaaagtatacgaaaaatccttagcaaaaacttctacaagatgttctc 39182889  T
Q  313 ttttt 317  Q
    |||||    
T  39182890 ttttt 39182894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 13 - 90
Target Start/End: Original strand, 6943853 - 6943935
Alignment:
Q  13 cagaccagcttactaataggatgccctaatacattacaaaatttcgctttagc-----atctaatcagaggaataattagaac 90  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||     ||||||| |||||||||||| ||||    
T  6943853 cagaccggcttactaataggatgccctaatacattacaaaatttcgctttagccaacgatctaataagaggaataattggaac 6943935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 13 - 90
Target Start/End: Original strand, 9935846 - 9935928
Alignment:
Q  13 cagaccagcttactaataggatgccctaatacattacaaaatttcgctttagc-----atctaatcagaggaataattagaac 90  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||     |||||||||||||| ||||| ||||    
T  9935846 cagaccggcttactaataggatgccctaatacattacaaaatttcgctttagccaatgatctaatcagaggagtaattggaac 9935928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 603 - 661
Target Start/End: Original strand, 30129136 - 30129194
Alignment:
Q  603 tttttacaagattttatgatttctgcctcctctaaggaagagcttaattctaggaaaaa 661  Q
    |||||| |||||||| ||||||| ||||||||||||||||| |||||||||||||||||    
T  30129136 tttttataagattttgtgatttcagcctcctctaaggaagatcttaattctaggaaaaa 30129194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 21 - 90
Target Start/End: Original strand, 5598563 - 5598637
Alignment:
Q  21 cttactaataggatgccctaatacattacaaaatttcgctttagc-----atctaatcagaggaataattagaac 90  Q
    |||||||||| ||||||||||||||||||||||||| | ||||||     |||||||||||||||||||| ||||    
T  5598563 cttactaatatgatgccctaatacattacaaaattttgatttagccaatgatctaatcagaggaataattggaac 5598637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 615 - 661
Target Start/End: Original strand, 12173140 - 12173186
Alignment:
Q  615 tttatgatttctgcctcctctaaggaagagcttaattctaggaaaaa 661  Q
    |||||||||||| |||||||||||||| |||||||||||||||||||    
T  12173140 tttatgatttctacctcctctaaggaaaagcttaattctaggaaaaa 12173186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 615 - 661
Target Start/End: Complemental strand, 21908192 - 21908146
Alignment:
Q  615 tttatgatttctgcctcctctaaggaagagcttaattctaggaaaaa 661  Q
    |||||||||||| |||||||||||||| |||||||||||||||||||    
T  21908192 tttatgatttctacctcctctaaggaaaagcttaattctaggaaaaa 21908146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 615 - 661
Target Start/End: Complemental strand, 29105042 - 29104996
Alignment:
Q  615 tttatgatttctgcctcctctaaggaagagcttaattctaggaaaaa 661  Q
    |||||||||||| |||||||||||||| |||||||||||||||||||    
T  29105042 tttatgatttctacctcctctaaggaaaagcttaattctaggaaaaa 29104996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 615 - 661
Target Start/End: Complemental strand, 3223708 - 3223662
Alignment:
Q  615 tttatgatttctgcctcctctaaggaagagcttaattctaggaaaaa 661  Q
    ||||||||| || |||||||||||||| |||||||||||||||||||    
T  3223708 tttatgattactacctcctctaaggaaaagcttaattctaggaaaaa 3223662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 615 - 661
Target Start/End: Complemental strand, 21982031 - 21981985
Alignment:
Q  615 tttatgatttctgcctcctctaaggaagagcttaattctaggaaaaa 661  Q
    ||||| |||||| |||||||||||||| ||| |||||||||||||||    
T  21982031 tttataatttctacctcctctaaggaaaagcataattctaggaaaaa 21981985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 615 - 661
Target Start/End: Complemental strand, 37080448 - 37080402
Alignment:
Q  615 tttatgatttctgcctcctctaaggaagagcttaattctaggaaaaa 661  Q
    |||| ||||||| |||||||||||||| ||||||||||||| |||||    
T  37080448 tttaggatttctacctcctctaaggaaaagcttaattctagaaaaaa 37080402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 682 - 735
Target Start/End: Complemental strand, 40765443 - 40765390
Alignment:
Q  682 catatataattcatatgcacccccgctcagtatcataataagtaaatcgcattt 735  Q
    |||||| || |||| || ||||||||||||||||||||| |||||||| |||||    
T  40765443 catatacaactcatctgtacccccgctcagtatcataatgagtaaatcacattt 40765390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 137; Significance: 5e-71; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 137; E-Value: 5e-71
Query Start/End: Original strand, 385 - 540
Target Start/End: Complemental strand, 37875089 - 37874933
Alignment:
Q  385 gtagaaaaaggaagatagattcatattcacatacatacaaattatagaggaacaagaataatctctgattactttttgaaaaagtagaaatcga-ttttt 483  Q
    ||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||    
T  37875089 gtagaaaaaggaagatagattaatattcacatacataaaaattatagaggaacaagaataatctcggattactttttgaaaaagtagaaatcgagttttt 37874990  T
Q  484 ggtagtaataaaactattccaattactaaaattataaagaaacaatcgtaataaatg 540  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37874989 ggtagtaataaaactattccaattactaaaattataaagaaacaatcgtaataaatg 37874933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 98 - 188
Target Start/End: Complemental strand, 11936204 - 11936112
Alignment:
Q  98 aattggtttatattgatcattcttggttgagaccgaacataaaaaa--ccttgccataaatgaataaaataatgtttccatttattcatcaaa 188  Q
    |||||||||||||| ||| ||||||||||||| | |||||||||||  |||||||||||||||||||||||||||||||||||||||||||||    
T  11936204 aattggtttatattcatcgttcttggttgagatcaaacataaaaaaaaccttgccataaatgaataaaataatgtttccatttattcatcaaa 11936112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 410 - 528
Target Start/End: Original strand, 17535392 - 17535510
Alignment:
Q  410 ttcacatacatacaaattatagaggaacaagaataatctctgattactttttgaaaaagtagaaatc-gatttttggtagtaataaaactattccaatta 508  Q
    |||||||||||| || ||||||||||||||||| |||||  ||||||||| |||||||||||||||| || |||||||||||| |||| ||||||||||     
T  17535392 ttcacatacataaaacttatagaggaacaagaacaatcttagattactttatgaaaaagtagaaatcagacttttggtagtaacaaaaatattccaatt- 17535490  T
Q  509 ctaaaattataaagaaacaa 528  Q
    | ||| ||||||||||||||    
T  17535491 ccaaatttataaagaaacaa 17535510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 580 - 661
Target Start/End: Complemental strand, 37874807 - 37874725
Alignment:
Q  580 aaatggaatgaattgatctcaaatttttac-aagattttatgatttctgcctcctctaaggaagagcttaattctaggaaaaa 661  Q
    |||||||||||||||||||||| |||||   |||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  37874807 aaatggaatgaattgatctcaatttttttttaagattttatgatttctgcctcctctaaggaagagcttaattctagaaaaaa 37874725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 58; E-Value: 7e-24
Query Start/End: Original strand, 580 - 661
Target Start/End: Complemental strand, 44511742 - 44511661
Alignment:
Q  580 aaatggaatgaattgatctcaaatttttacaagattttatgatttctgcctcctctaaggaagagcttaattctaggaaaaa 661  Q
    |||| ||||||||| |||||||||||||| |||||||| |||||||| |||||||||||||||||||||||||||| |||||    
T  44511742 aaatagaatgaattcatctcaaatttttataagattttttgatttctacctcctctaaggaagagcttaattctagaaaaaa 44511661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 13 - 90
Target Start/End: Complemental strand, 11936414 - 11936332
Alignment:
Q  13 cagaccagcttactaataggatgccctaatacattacaaaatttcgctttagc-----atctaatcagaggaataattagaac 90  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||     |||||||||||||||||||| ||||    
T  11936414 cagaccggcttactaataggatgccctaatacattacaaaatttcgctttagccaacgatctaatcagaggaataattggaac 11936332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 98 - 168
Target Start/End: Complemental strand, 37873128 - 37873053
Alignment:
Q  98 aattggtttatattgatcattcttggttgagaccgaacataa-----aaaaccttgccataaatgaataaaataat 168  Q
    |||||||||||||| ||| ||||||||||||||| |||||||     |||||||||||||||||||||||||||||    
T  37873128 aattggtttatattcatcgttcttggttgagaccaaacataaaaaaaaaaaccttgccataaatgaataaaataat 37873053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 615 - 661
Target Start/End: Original strand, 35833879 - 35833925
Alignment:
Q  615 tttatgatttctgcctcctctaaggaagagcttaattctaggaaaaa 661  Q
    |||||||||||| |||||||||||||| |||||||||||||||||||    
T  35833879 tttatgatttctacctcctctaaggaaaagcttaattctaggaaaaa 35833925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 615 - 661
Target Start/End: Original strand, 39164415 - 39164461
Alignment:
Q  615 tttatgatttctgcctcctctaaggaagagcttaattctaggaaaaa 661  Q
    |||||||||||| |||||||||||||| |||||||||||||||||||    
T  39164415 tttatgatttctacctcctctaaggaaaagcttaattctaggaaaaa 39164461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 163 - 218
Target Start/End: Complemental strand, 37869696 - 37869641
Alignment:
Q  163 aataatgtttccatttattcatcaaaaaaggtgaattcttcaaagccagaatgcat 218  Q
    ||||||||||||||||||||||||||||||  ||||||||  |||| |||||||||    
T  37869696 aataatgtttccatttattcatcaaaaaagacgaattctttgaagctagaatgcat 37869641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 615 - 660
Target Start/End: Complemental strand, 42632444 - 42632399
Alignment:
Q  615 tttatgatttctgcctcctctaaggaagagcttaattctaggaaaa 660  Q
    |||||||||||| |||||||||||||| ||| ||||||||||||||    
T  42632444 tttatgatttctacctcctctaaggaaaagcataattctaggaaaa 42632399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 580 - 617
Target Start/End: Complemental strand, 45194198 - 45194161
Alignment:
Q  580 aaatggaatgaattgatctcaaatttttacaagatttt 617  Q
    ||||||||||||||||||||||||||||| ||||||||    
T  45194198 aaatggaatgaattgatctcaaatttttataagatttt 45194161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 615 - 661
Target Start/End: Original strand, 5156735 - 5156781
Alignment:
Q  615 tttatgatttctgcctcctctaaggaagagcttaattctaggaaaaa 661  Q
    ||||| |||||| | |||||||||||| |||||||||||||||||||    
T  5156735 tttatcatttctacttcctctaaggaaaagcttaattctaggaaaaa 5156781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 615 - 661
Target Start/End: Original strand, 20912588 - 20912634
Alignment:
Q  615 tttatgatttctgcctcctctaaggaagagcttaattctaggaaaaa 661  Q
    |||| ||||||| |||||||||| ||| |||||||||||||||||||    
T  20912588 tttaagatttctacctcctctaacgaaaagcttaattctaggaaaaa 20912634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.000000000001; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 615 - 661
Target Start/End: Complemental strand, 27426669 - 27426623
Alignment:
Q  615 tttatgatttctgcctcctctaaggaagagcttaattctaggaaaaa 661  Q
    |||||||||||| |||||||||||||| |||||||||||||||||||    
T  27426669 tttatgatttctacctcctctaaggaaaagcttaattctaggaaaaa 27426623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 615 - 661
Target Start/End: Original strand, 26719994 - 26720040
Alignment:
Q  615 tttatgatttctgcctcctctaaggaagagcttaattctaggaaaaa 661  Q
    ||||| |||||| |||||||||||||| |||||||||||||||||||    
T  26719994 tttataatttctacctcctctaaggaaaagcttaattctaggaaaaa 26720040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 615 - 661
Target Start/End: Original strand, 26989740 - 26989786
Alignment:
Q  615 tttatgatttctgcctcctctaaggaagagcttaattctaggaaaaa 661  Q
    ||||| |||||| |||||||||||||| |||||||||||||||||||    
T  26989740 tttataatttctacctcctctaaggaaaagcttaattctaggaaaaa 26989786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 615 - 661
Target Start/End: Complemental strand, 1949435 - 1949389
Alignment:
Q  615 tttatgatttctgcctcctctaaggaagagcttaattctaggaaaaa 661  Q
    |||||||||||| ||||||||||| || ||||||||||||| |||||    
T  1949435 tttatgatttctacctcctctaagaaaaagcttaattctagaaaaaa 1949389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.000000000001; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 615 - 661
Target Start/End: Complemental strand, 1824033 - 1823987
Alignment:
Q  615 tttatgatttctgcctcctctaaggaagagcttaattctaggaaaaa 661  Q
    |||||||||||| |||||||||||||| |||||||||||||||||||    
T  1824033 tttatgatttctacctcctctaaggaaaagcttaattctaggaaaaa 1823987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 615 - 661
Target Start/End: Original strand, 8263444 - 8263490
Alignment:
Q  615 tttatgatttctgcctcctctaaggaagagcttaattctaggaaaaa 661  Q
    |||||||||||| |||||||||||||| |||||||||||||||||||    
T  8263444 tttatgatttctacctcctctaaggaaaagcttaattctaggaaaaa 8263490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 615 - 661
Target Start/End: Complemental strand, 15232259 - 15232213
Alignment:
Q  615 tttatgatttctgcctcctctaaggaagagcttaattctaggaaaaa 661  Q
    ||||||||| || |||||||||||||| |||||||||||||||||||    
T  15232259 tttatgattactacctcctctaaggaaaagcttaattctaggaaaaa 15232213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 615 - 661
Target Start/End: Complemental strand, 16028893 - 16028847
Alignment:
Q  615 tttatgatttctgcctcctctaaggaagagcttaattctaggaaaaa 661  Q
    |||||||||||| |||||||||||||| ||||||||||||| |||||    
T  16028893 tttatgatttctacctcctctaaggaaaagcttaattctagaaaaaa 16028847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 615 - 661
Target Start/End: Original strand, 16291296 - 16291342
Alignment:
Q  615 tttatgatttctgcctcctctaaggaagagcttaattctaggaaaaa 661  Q
    ||||||||| || |||||||||||||| |||||||||||||||||||    
T  16291296 tttatgattactacctcctctaaggaaaagcttaattctaggaaaaa 16291342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 615 - 661
Target Start/End: Original strand, 17202278 - 17202324
Alignment:
Q  615 tttatgatttctgcctcctctaaggaagagcttaattctaggaaaaa 661  Q
    |||||||||||| ||||| |||||||| |||||||||||||||||||    
T  17202278 tttatgatttctacctccactaaggaaaagcttaattctaggaaaaa 17202324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 611 - 661
Target Start/End: Original strand, 20015281 - 20015331
Alignment:
Q  611 agattttatgatttctgcctcctctaaggaagagcttaattctaggaaaaa 661  Q
    ||||||| |||||||  ||||| ||||||||||||||||||||||||||||    
T  20015281 agattttgtgatttcaacctccactaaggaagagcttaattctaggaaaaa 20015331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.0000000004; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 615 - 661
Target Start/End: Complemental strand, 10130376 - 10130330
Alignment:
Q  615 tttatgatttctgcctcctctaaggaagagcttaattctaggaaaaa 661  Q
    |||||||||||| ||||||| |||||| |||||||||||||||||||    
T  10130376 tttatgatttctacctcctccaaggaaaagcttaattctaggaaaaa 10130330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 615 - 661
Target Start/End: Complemental strand, 26241891 - 26241845
Alignment:
Q  615 tttatgatttctgcctcctctaaggaagagcttaattctaggaaaaa 661  Q
    |||||||||||| | |||||||||||| |||||||||||||||||||    
T  26241891 tttatgatttctacttcctctaaggaaaagcttaattctaggaaaaa 26241845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 615 - 661
Target Start/End: Complemental strand, 25312356 - 25312310
Alignment:
Q  615 tttatgatttctgcctcctctaaggaagagcttaattctaggaaaaa 661  Q
    |||||||||||| |||||||||||||| |||||||||| ||| ||||    
T  25312356 tttatgatttctacctcctctaaggaaaagcttaattcaaggcaaaa 25312310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 615 - 661
Target Start/End: Complemental strand, 26199850 - 26199804
Alignment:
Q  615 tttatgatttctgcctcctctaaggaagagcttaattctaggaaaaa 661  Q
    |||||||||||| |||||||||||||| |||||||||| ||| ||||    
T  26199850 tttatgatttctacctcctctaaggaaaagcttaattcaaggcaaaa 26199804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017 (Bit Score: 31; Significance: 0.00000009; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 615 - 661
Target Start/End: Complemental strand, 188959 - 188913
Alignment:
Q  615 tttatgatttctgcctcctctaaggaagagcttaattctaggaaaaa 661  Q
    |||||||||||| | |||||||||||| ||| |||||||||||||||    
T  188959 tttatgatttctacttcctctaaggaaaagcataattctaggaaaaa 188913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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