View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18272_low_11 (Length: 473)
Name: NF18272_low_11
Description: NF18272
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18272_low_11 |
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| [»] scaffold0072 (2 HSPs) |
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Alignment Details
Target: scaffold0072 (Bit Score: 185; Significance: 1e-100; HSPs: 2)
Name: scaffold0072
Description:
Target: scaffold0072; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 188 - 452
Target Start/End: Complemental strand, 45619 - 45356
Alignment:
| Q |
188 |
tgttatgatttgatatgataaaaggtactgttatattgaaatgatagtaaaaagataataatctgaatattattgatggaaaaatggttaaaaccaattg |
287 |
Q |
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| T |
45619 |
tgttatgatttgatatgataataggtactgttatattgaaatgacagtaaaatgataataatctaaatattattgatggaaaaatggttaaaaccaattg |
45520 |
T |
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| Q |
288 |
aagaaaggtacagggaatgaaatgatagtgcagaaaagcataaagcttcannnnnnnnnnnnccatatttctaccaaatattattccccccttaacaatg |
387 |
Q |
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| T |
45519 |
aagaaaggtacagggaatgaaatgatagtgcagaaaagcataaagctttaagagagagagagccataattctaccaaatattatt-cccccttaacaatg |
45421 |
T |
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| Q |
388 |
caaatgattgtcctatttaacagagtcctcagtgaactttctgttaggaatcctatgcctcattc |
452 |
Q |
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| T |
45420 |
ctaatgattgtcctatttaacagagtcctcattgaactttctgttaggaatcatatgcctcattc |
45356 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0072; HSP #2
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 187 - 452
Target Start/End: Complemental strand, 40790 - 40524
Alignment:
| Q |
187 |
atgttatgatttgatatgataaaaggtactgttatattgaaatgatagtaaaaagataataatctgaatattattgatggaaaaatggttaaaaccaatt |
286 |
Q |
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| T |
40790 |
atgttatgatttgatatgataataggtactgttatattgaaatgacagtaaaatgataataatctaaatattattgatggaaaaatggttaaaaccaatt |
40691 |
T |
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| Q |
287 |
gaagaaaggtacagggaatgaaatgatagtgcagaaaagcataaagcttca--nnnnnnnnnnnnccatatttctaccaaatattattccccccttaaca |
384 |
Q |
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| T |
40690 |
gaagaaaggtacagggaatgaaatgatagtgcagaaaagcataaagcttaaagagagagagagagccataattctaccaaatattatt-cccccttaaca |
40592 |
T |
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| Q |
385 |
atgcaaatgattgtcctatttaacagagtcctcagtgaactttctgttaggaatcctatgcctcattc |
452 |
Q |
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| T |
40591 |
atgctaatgattgtcctatttaacagagtcctcattgaactttctgttaggaatcatatgcctcattc |
40524 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 180; Significance: 5e-97; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 180; E-Value: 5e-97
Query Start/End: Original strand, 1 - 188
Target Start/End: Complemental strand, 46381483 - 46381296
Alignment:
| Q |
1 |
aagactaatgtttccgaattgtaggagtgattatataaatttaaatgcaatccttatgttttatttttcgttataaaaaacattttggacgaagtaaact |
100 |
Q |
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| T |
46381483 |
aagaccaatgtttccgaattgtaggagtgattatataaatttaaatgcaatccttatgttttatttttcgttataaaaaacattttggacgaagtaaact |
46381384 |
T |
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| Q |
101 |
ttagttcagccactcaagctttgaaaataattgaatgaactcgtagcacacaaaatatttgtcagttcacaaactacatgtgcattat |
188 |
Q |
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| T |
46381383 |
ttagttcagccactcaagctttgaaaataattgaatgaactcgtagcacacaaaatatttgtcagttcacaaactacatgtgtattat |
46381296 |
T |
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