View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18272_low_12 (Length: 456)
Name: NF18272_low_12
Description: NF18272
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18272_low_12 |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 438; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 438; E-Value: 0
Query Start/End: Original strand, 11 - 456
Target Start/End: Original strand, 8817631 - 8818076
Alignment:
| Q |
11 |
atcatcataaggccatagctaatgcattgtaaccaaaaaacatcagaatttgagaagctgcattccaaactagtcttggcatgcctgattttctgcaata |
110 |
Q |
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| T |
8817631 |
atcatgataaggccatagctaatgcattgtaaccaaaaaacatcagaatttgagaagctgcattccaaactagtcttggcatgcctgattttctgcaata |
8817730 |
T |
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| Q |
111 |
taaatttaacatttcaaggtcaataaattggtagaatagccatcccagttcaaaagaaaacaattacaaagaacacaaacagagaacatgcgatattcgg |
210 |
Q |
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| T |
8817731 |
taaatttaacatttcaaggtcaataaattggtagaatagccatcccagttcaaaagaaaacaattacaaagaacacaaacagagaacatgcgatattcgg |
8817830 |
T |
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| Q |
211 |
tcacatattcaaccaattgtgcctacgtctccgaccatagagcggccacaccacagttctcatattgaagctaagggtttacaaatgacaacttgtgttt |
310 |
Q |
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| T |
8817831 |
tcacatattcaaccaattgtgcctacgtctccgaccatagagcggccacaccacagttctcatattgaagctaagggtttacaaatgacaacttgtgttt |
8817930 |
T |
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| Q |
311 |
aaataccacagtctagtttaaaaccagctagattgacatacccagttgtcagtaaactatgaatcatccgtaacataaattgcaaagaatcaatgttaaa |
410 |
Q |
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| T |
8817931 |
aaataccacagtctagtttaaaaccagctagattgacatacccagttgtcagtaaactatgaatcatccgtaacataaattgcaaagaatcaatgttaaa |
8818030 |
T |
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| Q |
411 |
tgaagctgacgtggctgcagttacagagacataaaaatattgactc |
456 |
Q |
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| T |
8818031 |
tgaaactgacgtggctgcagttacagagacataaaaatattgactc |
8818076 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 18 - 141
Target Start/End: Original strand, 8819241 - 8819363
Alignment:
| Q |
18 |
taaggccatagctaatgcattgtaaccaaaaaacatcagaatttgagaagctgcattccaaactagtcttggcatgcctgattttctgcaatataaattt |
117 |
Q |
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| T |
8819241 |
taaggccattgccaatgcaatgtaaccaaaaaacatcagaatttgagatgctgcattccaaactaaccttggcatgcctgattttctgccatataaaatt |
8819340 |
T |
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| Q |
118 |
aacatttcaaggtcaataaattgg |
141 |
Q |
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| T |
8819341 |
aaca-ttcaaggtcagtaaattgg |
8819363 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 288 - 330
Target Start/End: Original strand, 6522176 - 6522218
Alignment:
| Q |
288 |
tttacaaatgacaacttgtgtttaaataccacagtctagttta |
330 |
Q |
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| T |
6522176 |
tttacaaattacaacttgtgtttaaatactacggtctagttta |
6522218 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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