View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18272_low_13 (Length: 417)
Name: NF18272_low_13
Description: NF18272
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18272_low_13 |
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Alignment Details
Target: chr2 (Bit Score: 388; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 1 - 400
Target Start/End: Original strand, 8879495 - 8879894
Alignment:
| Q |
1 |
tctcttgccctaaaaattccacagtttctggtatctctaatgagtctgtgagttgtggagtgcctatgacaccttcctcaaacttgatctgaatagcata |
100 |
Q |
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| T |
8879495 |
tctcttgccctaaaaattccacagtttctggtatctctaatgagtctgtgagttgtggagtgcctatgacaccttcctcaaacttgatctgaataacata |
8879594 |
T |
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| Q |
101 |
aaagatgagaccaacagcttgaatcatgatatgattaaaatcacttgtttatcttaattgaattctacaagattaagcatttagagtgaataaccaccaa |
200 |
Q |
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| T |
8879595 |
aaagatgagaccaacagcttgaatcatgatatgattaaaatcacttgtttatcttaattgaattctacaagattaagcatttagagtgaataactaccaa |
8879694 |
T |
|
| Q |
201 |
cttgttcttcaaaaaatttaatatcacttgattagtgtccacaaaatttccgtacctattagagtcgttttgagtttgattctcctcattagactaattt |
300 |
Q |
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| T |
8879695 |
cttgttcttcaaaaaatttaatatcagttgattagtgtccacaaaatttccgtacctattagagtcgttttgagtttgattctcctcattagactaattt |
8879794 |
T |
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| Q |
301 |
gactaatatttgacattttcaaagacaataagtgtccatcttttttctcaaggatcaactcaaatattttatttaataaaacatctaaaacactaatacc |
400 |
Q |
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| T |
8879795 |
gactaatatttgacattttcaaagacaataagtgtccatcttttttctcaaggatcaactcaaatattttatttaataaaacatctaaaacactaatacc |
8879894 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 5 - 190
Target Start/End: Original strand, 8883298 - 8883483
Alignment:
| Q |
5 |
ttgccctaaaaattccacagtttctggtatctctaatgagtctgtgagttgtggagtgcctatgacaccttcctcaaacttgatctgaatagcataaaag |
104 |
Q |
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| T |
8883298 |
ttgccccaaaacttccacattttctggtatctctaatgagtctgtgagttgtggagtgcctatgacaccttcctcgaacttgatctgattaagataaaag |
8883397 |
T |
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| Q |
105 |
atgagaccaacagcttgaatcatgatatgattaaaatcacttgtttatcttaattgaattctacaagattaagcatttagagtgaa |
190 |
Q |
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| T |
8883398 |
atgagaccaataacttaaatcatgatatgatgaaattcacttgtttgtctaaattgaattctacacggataagcttttagagtgaa |
8883483 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 57; Significance: 1e-23; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 141 - 241
Target Start/End: Original strand, 45073035 - 45073134
Alignment:
| Q |
141 |
tcacttgtttatcttaattgaattctacaagattaagcatttagagtgaataaccaccaacttgttcttcaaaaaatttaatatcacttgattagtgtcc |
240 |
Q |
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| T |
45073035 |
tcacttgtttatcttaattgaattctagaatattaagcatttagagtgaataactactaacttaatcttc-agaaatttaatgtcagttgattagtgtcc |
45073133 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 39 - 80
Target Start/End: Original strand, 45072996 - 45073037
Alignment:
| Q |
39 |
aatgagtctgtgagttgtggagtgcctatgacaccttcctca |
80 |
Q |
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| T |
45072996 |
aatgagtctgtgaattgtggagtgcctatgataccttcctca |
45073037 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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