View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18272_low_14 (Length: 406)
Name: NF18272_low_14
Description: NF18272
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18272_low_14 |
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Alignment Details
Target: chr1 (Bit Score: 370; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 18 - 391
Target Start/End: Complemental strand, 47798994 - 47798621
Alignment:
| Q |
18 |
aatcataatatcattaaatggagagtaatgatttctagtccttggtaatgttttttcaatcaattatttccacctttgttgatagaacattatgatgtgg |
117 |
Q |
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| T |
47798994 |
aatcataatatcattaaatggagagtaatgatttctagtccttggtaatgttttttcaatcaattatttccacctttgttgatagaacattatgatgtgg |
47798895 |
T |
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| Q |
118 |
tttgatctatgtagttgactccacatataggttttattctttattttatctagaatagtaattggacttagattaagaagcaagatataggtgatacatg |
217 |
Q |
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| T |
47798894 |
tttgatctatgtagttgactccacatataggttttattctttattttatctagaatagtaattggacttagattaagaagcaagatataggtgatatatg |
47798795 |
T |
|
| Q |
218 |
tatagtactaaaagttgttaatttggaaatcaaaattattgaattatttttcataactctaatgtaatttgcagtttccattaatttccaaaagtggaca |
317 |
Q |
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| T |
47798794 |
tatagtactaaaagttgttaatttggaaatcaaaattattgaattatttttcataactctaatgtaatttgcagtttccattaatttccaaaagtggaca |
47798695 |
T |
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| Q |
318 |
cataaggaagctcatttcagaatctagtaatgctgttgctgatgttccattaattgaactcattgacgtctctg |
391 |
Q |
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| T |
47798694 |
cataaggaagctcatttcagaatctagtaatgctgttgctgatgttccattaattgaactcattgacgtctctg |
47798621 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 108; Significance: 4e-54; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 253 - 380
Target Start/End: Original strand, 39777384 - 39777511
Alignment:
| Q |
253 |
ttattgaattatttttcataactctaatgtaatttgcagtttccattaatttccaaaagtggacacataaggaagctcatttcagaatctagtaatgctg |
352 |
Q |
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| T |
39777384 |
ttattgaattatttttcataactctaacgtaatttgcagtttccattaatttcaaaaagtggatacataaggaagctcatttcagaatctagtgatgctg |
39777483 |
T |
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| Q |
353 |
ttgctgatgttccattaattgaactcat |
380 |
Q |
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| T |
39777484 |
ttgatgatgttccattaattgaactcat |
39777511 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 32 - 150
Target Start/End: Original strand, 39777166 - 39777284
Alignment:
| Q |
32 |
taaatggagagtaatgatttctagtccttggtaatgttttttcaatcaattatttccacctttgttgatagaacattatgatgtggtttgatctatgtag |
131 |
Q |
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| T |
39777166 |
taaatggagagtaatgaattctagtacttggttctgttttttcaatcaattctttgctttttttatgatacaacattatgatgtcgtttgatctatttag |
39777265 |
T |
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| Q |
132 |
ttgactccacatataggtt |
150 |
Q |
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| T |
39777266 |
ttgactccgcatattggtt |
39777284 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 97 - 134
Target Start/End: Original strand, 39812147 - 39812184
Alignment:
| Q |
97 |
tgatagaacattatgatgtggtttgatctatgtagttg |
134 |
Q |
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| T |
39812147 |
tgatagaacattatgatgtcgtttgatccatgtagttg |
39812184 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 97 - 141
Target Start/End: Complemental strand, 7513063 - 7513019
Alignment:
| Q |
97 |
tgatagaacattatgatgtggtttgatctatgtagttgactccac |
141 |
Q |
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| T |
7513063 |
tgatagaacattatgacgtaatttgatctatgtagttgaccccac |
7513019 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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