View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18272_low_16 (Length: 384)
Name: NF18272_low_16
Description: NF18272
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18272_low_16 |
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Alignment Details
Target: chr3 (Bit Score: 233; Significance: 1e-128; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 111 - 371
Target Start/End: Complemental strand, 26403527 - 26403268
Alignment:
| Q |
111 |
ttttatttccaccacacttagccctatggattaaaaattgtgattctctatgcttttttacttgccaacatactgttatattgctcacaactataagtaa |
210 |
Q |
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| T |
26403527 |
ttttatttccacctcacttagccctatggattaaaaattgtgattctctatgctttttaacttgccaacatactgttatgttgctcacaactataagtaa |
26403428 |
T |
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| Q |
211 |
cataagtatacagtttgagcatcttaggatccattttttgtattgcttggtcaccaacactatcacttgtagttgcactaccaccattgatgcggttctt |
310 |
Q |
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| T |
26403427 |
cataagtatacagtttgagcatcttaggatccattttttgtgttgcttggtca-caacactatcacttgtagttgcactaccaccattgatgctgttctt |
26403329 |
T |
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| Q |
311 |
cttaacatgaccaagatttgatttctctatattcatgttattgttgttgttgatgatgtcc |
371 |
Q |
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| T |
26403328 |
cttaacatgaccaagatttgatttctctatattcatgttattgttgttgttgatgatgtcc |
26403268 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 13 - 80
Target Start/End: Complemental strand, 26403625 - 26403558
Alignment:
| Q |
13 |
taaatttattttaatctttgaattaaaagtttattaaatttatgatactagttttttcaggttttact |
80 |
Q |
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| T |
26403625 |
taaatttattttaatctttgaattaaaagtttattaaatttattatactagttttttcaggttttact |
26403558 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 191 - 296
Target Start/End: Complemental strand, 26395520 - 26395415
Alignment:
| Q |
191 |
ttgctcacaactataagtaacataagtatacagtttgagcatcttaggatccattttttgtattgcttggtcaccaacactatcacttgtagttgcacta |
290 |
Q |
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| T |
26395520 |
ttgctcacaaatataagttacacaagtataccgtttgagcctctttggatccaaattttgtgttgcttgatcaccaacaccaacatttgcagatgcacta |
26395421 |
T |
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| Q |
291 |
ccacca |
296 |
Q |
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|||||| |
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| T |
26395420 |
ccacca |
26395415 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 273 - 357
Target Start/End: Complemental strand, 26402577 - 26402493
Alignment:
| Q |
273 |
tcacttgtagttgcactaccaccattgatgcggttcttcttaacatgaccaagatttgatttctctatattcatgttattgttgt |
357 |
Q |
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| T |
26402577 |
tcacctgtagttgctctaccaccattcatgtggttcttctcaatataaccaagatttgatttttctatatttaagttattgttgt |
26402493 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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