View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18272_low_2 (Length: 851)
Name: NF18272_low_2
Description: NF18272
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18272_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 625; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 625; E-Value: 0
Query Start/End: Original strand, 19 - 832
Target Start/End: Original strand, 10195771 - 10196577
Alignment:
| Q |
19 |
gatagagtttcaactttcaaatgatttttaagtatggttacaccgtataaaatatagaacccaccttcatcgagaatatgaacattcttattatgtaaac |
118 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
10195771 |
gatagagtttcaactttcaagtgatttttaagtatggttacaccgtataaaatatagaacccaccttcattgagaatatgaacattcttattatgtaaac |
10195870 |
T |
|
| Q |
119 |
tacctaaaaattatgccatttgatttgagataagaagagagagagatatgattatatacctgacatgttggtaacagaattccgaactcttctttcacag |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10195871 |
tacctaaaaattatgccatttgatttgagataagaagagagagagatatgattatatacctgacatgttggtaacagaattccgaactcttctttcacag |
10195970 |
T |
|
| Q |
219 |
ccatcacagtccattttcacctttatttcaactgtctataagagnnnnnnnnnnnnnnnnnnnnnntcagaattttcttaagactaataagctcactatt |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
10195971 |
ccatcacagtccattttcacctttatttcaactgtctataagagaaaaaagttgcaaaaaataaaatcagaattttcttaagactaataagctcactatt |
10196070 |
T |
|
| Q |
319 |
aatgagataggatacataggagctagtgaaaaacctgcatgggtttgtgtttcttttttggggtgacagtgaagtaatctgaaaggaaatctagagcacc |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10196071 |
aatgagataggatacataggagctagtgaaaaacctgcatgggtttgtgtttcttttttggggtgacagtgaagtaatctgaaaggaaatctagagcacc |
10196170 |
T |
|
| Q |
419 |
cattttcttatttcttgctcnnnnnnnngtgtaaagaaagaaatggattgggttagtacttgaaaagaaaaaggatgaaaaaggaggatgtatatgacta |
518 |
Q |
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| T |
10196171 |
cattttcttatttcttgctc-tttttttgtgtaaagaaagaaatggattgggttagtacttgaaaagaaaaaggatggaaaaggaggatgtatatgacta |
10196269 |
T |
|
| Q |
519 |
tattatggttaccaaattatatacttttataaaggaattatggaactatggatgtgatttcggttactatatgtgcaacttgtgctaaaatttataatgc |
618 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
10196270 |
tattatggttaccaaattatatacttttataaaggaattatggaactatggatgtgatttcggttactatatgtgcaacttgtgctaaaatt--taatgc |
10196367 |
T |
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| Q |
619 |
ataaaataatgcttagacaattatttttcatttcatagtcatctcaa-nnnnnnnncatattgtctctaatcatgtatcttcccgcaaatatcggggtga |
717 |
Q |
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||||||||||||||| | ||||||| ||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
10196368 |
ataaaataatgcttaaataattatt-----tttcatagtcatctcaatttttttttcatattgtctctaatcatgtatattcccgcaaatatcggggtga |
10196462 |
T |
|
| Q |
718 |
ccccaattcacaaatataattgaacattgaacttcctttgaacttttctacacaatatcatcttgatttgtatctgtctatgatagggatttgacaataa |
817 |
Q |
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| T |
10196463 |
ccccaattcacaaatataattgaacattgaacttcctttgaacttttctacacaatatcatcttgatctgtacctgtctatgatagggatttgacaataa |
10196562 |
T |
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| Q |
818 |
gaatgttatgtggat |
832 |
Q |
| |
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||||||||||||||| |
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| T |
10196563 |
gaatgttatgtggat |
10196577 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 49; Significance: 1e-18; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 191 - 255
Target Start/End: Complemental strand, 10651177 - 10651113
Alignment:
| Q |
191 |
aacagaattccgaactcttctttcacagccatcacagtccattttcacctttatttcaactgtct |
255 |
Q |
| |
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| T |
10651177 |
aacagaattcctaactcttctttcacatccatcacagtccattttcaccttgatttcaaccgtct |
10651113 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 204 - 259
Target Start/End: Complemental strand, 31886871 - 31886816
Alignment:
| Q |
204 |
actcttctttcacagccatcacagtccattttcacctttatttcaactgtctataa |
259 |
Q |
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| T |
31886871 |
actcttctttcacacccatcacaatccattttgactttgatctcaactgtctataa |
31886816 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 204 - 255
Target Start/End: Complemental strand, 54328 - 54277
Alignment:
| Q |
204 |
actcttctttcacagccatcacagtccattttcacctttatttcaactgtct |
255 |
Q |
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| T |
54328 |
actcttctttcacaaccatcacagtccattctcacttttatctcaaccgtct |
54277 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 204 - 259
Target Start/End: Complemental strand, 2306684 - 2306629
Alignment:
| Q |
204 |
actcttctttcacagccatcacagtccattttcacctttatttcaactgtctataa |
259 |
Q |
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|||||||||||||| |||||||| |||||||| || || || |||||||||||||| |
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| T |
2306684 |
actcttctttcacacccatcacaatccattttgactttgatctcaactgtctataa |
2306629 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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