View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18272_low_20 (Length: 330)
Name: NF18272_low_20
Description: NF18272
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18272_low_20 |
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Alignment Details
Target: chr3 (Bit Score: 257; Significance: 1e-143; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 19 - 324
Target Start/End: Original strand, 31542032 - 31542337
Alignment:
| Q |
19 |
aatgcctacacatttaacctgctcttaatttctaggtgtgtttctaagcttcttctaataatcatactcatgannnnnnnacctataatttagtcttgtc |
118 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
31542032 |
aatgcctacacatttcacctgctcttaatttctaggtgtgtttctacgcttcttctaataatcatactcatgatttttttacctataatttagtcttgtc |
31542131 |
T |
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| Q |
119 |
tcaaatcctatattccccgacattaattattcctaatgtcacttctaaacttttactaatccacgctttggggttttgtcgttctgatttgcacgtgtgt |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||| |
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| T |
31542132 |
tcaaatcctatattccccgacattaattattcctaatgtcacttctaaacttttactaatcctccctttggggttttgtcgttctgatttgcacgtgtgt |
31542231 |
T |
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| Q |
219 |
tgcttagttcacactgaggtaattagtctcaaatgctatcatcatcctaaatacttaaatctcctatctaattcacacggagattgtttcttttttcttc |
318 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||| |
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| T |
31542232 |
tgcttagttcacactgaggtaattagtctcaaatgctatcatcatcctaaatacttaaatctcctatctaattcacacggagattattttttttttcttc |
31542331 |
T |
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| Q |
319 |
atttca |
324 |
Q |
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||||| |
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| T |
31542332 |
ttttca |
31542337 |
T |
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