View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18272_low_21 (Length: 303)

Name: NF18272_low_21
Description: NF18272
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18272_low_21
NF18272_low_21
[»] chr3 (11 HSPs)
chr3 (1-289)||(13002932-13003220)
chr3 (1-289)||(31252366-31252654)
chr3 (2-282)||(31093733-31094013)
chr3 (3-282)||(16163063-16163342)
chr3 (4-281)||(27206401-27206680)
chr3 (5-272)||(27229070-27229337)
chr3 (1-268)||(25658493-25658760)
chr3 (1-268)||(25664898-25665165)
chr3 (1-268)||(25671303-25671570)
chr3 (1-268)||(25677708-25677975)
chr3 (1-268)||(25684384-25684651)
[»] scaffold0029 (2 HSPs)
scaffold0029 (2-185)||(18364-18547)
scaffold0029 (2-185)||(43376-43559)
[»] chr2 (2 HSPs)
chr2 (2-185)||(33120609-33120792)
chr2 (2-185)||(33130352-33130535)


Alignment Details
Target: chr3 (Bit Score: 260; Significance: 1e-145; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 1 - 289
Target Start/End: Original strand, 13002932 - 13003220
Alignment:
1 acaccatactgttgtggtgtttgatataaacgcttggcatcgttgtagtaatcaaaatatactatcttagcttgagggtgtttctgttttattgtctcta 100  Q
    |||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
13002932 acaccatattgttgtggtgtttgatataaacgcttggcatcgttgtaataatcaaaatatactatcttagcttgagggtgtttctgttttattgtctcta 13003031  T
101 tggannnnnnnagctgctcattaaagtattcaatgagagtgttgtaagctatcaaacatccaaattcatcatagtcttctttcttctgactaatcttttt 200  Q
    ||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
13003032 tggatttttttagctgctcattaaagtattcaatgagagtgttgtaagctatcaaacatccaaattcatcatagtcttctttcttctgactaatcttttt 13003131  T
201 tgacaatatgtcagtattacaccccattggaaagttccctggaaccactagctccaccgctccttcttcaattaaagcctgacaaacat 289  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
13003132 tgacaatatgtcagtattacaccccattggaaagttccctggaaccactagctccaccgctccttcttcaattaaagcctgacaaacat 13003220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 1 - 289
Target Start/End: Complemental strand, 31252654 - 31252366
Alignment:
1 acaccatactgttgtggtgtttgatataaacgcttggcatcgttgtagtaatcaaaatatactatcttagcttgagggtgtttctgttttattgtctcta 100  Q
    |||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
31252654 acaccatactgttgaggtgtttgatataaacgcttggcatcgttgtaataatcaaaatatactatcttagcttgagggtgtttctgttttattgtctcta 31252555  T
101 tggannnnnnnagctgctcattaaagtattcaatgagagtgttgtaagctatcaaacatccaaattcatcatagtcttctttcttctgactaatcttttt 200  Q
    ||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
31252554 tggatttttttagctgctcattaaagtattcaatgagagtgttgtaagctatcaaacatccaaattcatcatagtcttctttcttctgactaatcttttt 31252455  T
201 tgacaatatgtcagtattacaccccattggaaagttccctggaaccactagctccaccgctccttcttcaattaaagcctgacaaacat 289  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
31252454 tgacaatatgtcagtattacaccccattggaaagttccctggaaccactagctccaccgctccttcttcaattaaagcctgacaaacat 31252366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 2 - 282
Target Start/End: Original strand, 31093733 - 31094013
Alignment:
2 caccatactgttgtggtgtttgatataaacgcttggcatcgttgtagtaatcaaaatatactatcttagcttgagggtgtttctgttttattgtctctat 101  Q
    ||||||| |||||||||| |||||||||||| |||||||||||||| || |||||||||||||||||||||||||||||||||||||||||| |||||||    
31093733 caccatattgttgtggtgcttgatataaacgtttggcatcgttgtaatagtcaaaatatactatcttagcttgagggtgtttctgttttattatctctat 31093832  T
102 ggannnnnnnagctgctcattaaagtattcaatgagagtgttgtaagctatcaaacatccaaattcatcatagtcttctttcttctgactaatctttttt 201  Q
    |||       |||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
31093833 ggatttttttagctgctcattaaagtattcgatgaaagtgttgtaagctatcaaacatccaaattcatcatagtcttctttcttctgactaatctttttt 31093932  T
202 gacaatatgtcagtattacaccccattggaaagttccctggaaccactagctccaccgctccttcttcaattaaagcctga 282  Q
    ||||||||||||||||||||||| ||||||||||| |||| |||||||||||| |||||||||||||||||||||||||||    
31093933 gacaatatgtcagtattacaccctattggaaagtttcctgaaaccactagctcaaccgctccttcttcaattaaagcctga 31094013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 151; E-Value: 6e-80
Query Start/End: Original strand, 3 - 282
Target Start/End: Complemental strand, 16163342 - 16163063
Alignment:
3 accatactgttgtggtgtttgatataaacgcttggcatcgttgtagtaatcaaaatatactatcttagcttgagggtgtttctgttttattgtctctatg 102  Q
    |||||| |||||||||| || ||||||||| ||||||||||||||||| |||||||||| ||||||||||||||| ||||||||   || ||||||||||    
16163342 accatattgttgtggtgcttcatataaacgtttggcatcgttgtagtagtcaaaatatattatcttagcttgaggatgtttctgccgtaatgtctctatg 16163243  T
103 gannnnnnnagctgctcattaaagtattcaatgagagtgttgtaagctatcaaacatccaaattcatcatagtcttctttcttctgactaatcttttttg 202  Q
    ||       || ||||||||||||||||| |||| || |||||||||||| |||||||||||||||||||| || |||||||| || |||||||||||||    
16163242 gatttttttagttgctcattaaagtattcgatgaaagagttgtaagctattaaacatccaaattcatcataatcctctttcttttggctaatcttttttg 16163143  T
203 acaatatgtcagtattacaccccattggaaagttccctggaaccactagctccaccgctccttcttcaattaaagcctga 282  Q
     ||||||||||  |||||| |||||||||||||| ||||||||||||||||| |||||||||||||||||||| ||||||    
16163142 tcaatatgtcaacattacatcccattggaaagttacctggaaccactagctcaaccgctccttcttcaattaatgcctga 16163063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 4 - 281
Target Start/End: Complemental strand, 27206680 - 27206401
Alignment:
4 ccatactgttgtggtgtttgatataaacgcttggcatcgttgtagtaatcaaaatatactatcttagcttgagggtgtttctgttttattgtctctatgg 103  Q
    ||||| |||| ||||| ||| |||||||| ||| |||| |||||    ||||| |||||||||||||||||||||||||| ||  ||| ||||| |||||    
27206680 ccatattgttctggtgcttggtataaacgtttgacatcattgtaaacgtcaaagtatactatcttagcttgagggtgtttatgccttagtgtctttatgg 27206581  T
104 annnnnnnagctgctc--attaaagtattcaatgagagtgttgtaagctatcaaacatccaaattcatcatagtcttctttcttctgactaatctttttt 201  Q
    |       || |  |   |||||||||||  |||| || |||||| ||||||||||||||||||| |||||||||||||||||||||||||||||| |||    
27206580 attttttaagttttttttattaaagtattttatgaaagagttgtatgctatcaaacatccaaatttatcatagtcttctttcttctgactaatcttattt 27206481  T
202 gacaatatgtcagtattacaccccattggaaagttccctggaaccactagctccaccgctccttcttcaattaaagcctg 281  Q
    ||||||| || || | |||| || ||||| |||||||||  |||||| | ||| ||||||||||||||||||||||||||    
27206480 gacaataagtgagcagtacatcctattgggaagttccctaaaaccaccaactctaccgctccttcttcaattaaagcctg 27206401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 5 - 272
Target Start/End: Complemental strand, 27229337 - 27229070
Alignment:
5 catactgttgtggtgtttgatataaacgcttggcatcgttgtagtaatcaaaatatactatcttagcttgagggtgtttctgttttattgtctctatgga 104  Q
    |||| |||||||||| |||||||||||| ||| ||   |||||||  ||||| |||| |||| ||||||||  |||||| |||||||  ||||||||  |    
27229337 catattgttgtggtgattgatataaacgtttgacaatattgtagtggtcaaagtatattatcctagcttgatagtgtttttgttttaacgtctctatata 27229238  T
105 nnnnnnnagctgctcattaaagtattcaatgagagtgttgtaagctatcaaacatccaaattcatcatagtcttctttcttctgactaatcttttttgac 204  Q
           || ||||||||| ||||||| |||| ||||||||||| |||||||||||||||||||||||| |||||||||||||||||| ||    |  ||    
27229237 ttttttgagttgctcattatagtattcgatgaaagtgttgtaagttatcaaacatccaaattcatcataatcttctttcttctgactattcaccctccac 27229138  T
205 aatatgtcagtattacaccccattggaaagttccctggaaccactagctccaccgctccttcttcaat 272  Q
    |||||| |   ||||||||| ||||||||||| |||||||||||||| || |  ||||||||||||||    
27229137 aatatgccgacattacaccctattggaaagtttcctggaaccactagttctattgctccttcttcaat 27229070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 268
Target Start/End: Complemental strand, 25658760 - 25658493
Alignment:
1 acaccatactgttgtggtgtttgatataaacgcttggcatcgttgtagtaatcaaaatatactatcttagcttgagggtgtttctgttttattgtctcta 100  Q
    |||||||| || |||||||||||||||||||| |||  || ||||||||| |||||||||| ||||||||||||||||| ||| ||| ||| ||||||||    
25658760 acaccatattgctgtggtgtttgatataaacgtttgagattgttgtagtagtcaaaatatattatcttagcttgagggtatttatgtcttaatgtctcta 25658661  T
101 tggannnnnnnagctgctcattaaagtattcaatgagagtgttgtaagctatcaaacatccaaattcatcatagtcttctttcttctgactaatcttttt 200  Q
    | ||       || || |||||  |||||||   || ||  |||||||||||||  || |||| ||||||||||||||||||||||  |||||||   ||    
25658660 tagaatttttaagttgttcattgtagtattcggcgaaagcattgtaagctatcaggcacccaagttcatcatagtcttctttcttcgtactaatcaaatt 25658561  T
201 tgacaatatgtcagtattacaccccattggaaagttccctggaaccactagctccaccgctccttctt 268  Q
    || ||| |   ||| ||||||||| ||||||||||| || |||| |||||||||||| ||||||||||    
25658560 tgtcaacacaccagcattacacccaattggaaagtttccaggaatcactagctccacggctccttctt 25658493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 268
Target Start/End: Complemental strand, 25665165 - 25664898
Alignment:
1 acaccatactgttgtggtgtttgatataaacgcttggcatcgttgtagtaatcaaaatatactatcttagcttgagggtgtttctgttttattgtctcta 100  Q
    |||||||| || |||||||||||||||||||| |||  || ||||||||| |||||||||| ||||||||||||||||| ||| ||| ||| ||||||||    
25665165 acaccatattgctgtggtgtttgatataaacgtttgagattgttgtagtagtcaaaatatattatcttagcttgagggtatttatgtcttaatgtctcta 25665066  T
101 tggannnnnnnagctgctcattaaagtattcaatgagagtgttgtaagctatcaaacatccaaattcatcatagtcttctttcttctgactaatcttttt 200  Q
    | ||       || || |||||  |||||||   || ||  |||||||||||||  || |||| ||||||||||||||||||||||  |||||||   ||    
25665065 tagaatttttaagttgttcattgtagtattcggcgaaagcattgtaagctatcaggcacccaagttcatcatagtcttctttcttcgtactaatcaaatt 25664966  T
201 tgacaatatgtcagtattacaccccattggaaagttccctggaaccactagctccaccgctccttctt 268  Q
    || ||| |   ||| ||||||||| ||||||||||| || |||| |||||||||||| ||||||||||    
25664965 tgtcaacacaccagcattacacccaattggaaagtttccaggaatcactagctccacggctccttctt 25664898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 268
Target Start/End: Complemental strand, 25671570 - 25671303
Alignment:
1 acaccatactgttgtggtgtttgatataaacgcttggcatcgttgtagtaatcaaaatatactatcttagcttgagggtgtttctgttttattgtctcta 100  Q
    |||||||| || |||||||||||||||||||| |||  || ||||||||| |||||||||| ||||||||||||||||| ||| ||| ||| ||||||||    
25671570 acaccatattgctgtggtgtttgatataaacgtttgagattgttgtagtagtcaaaatatattatcttagcttgagggtatttatgtcttaatgtctcta 25671471  T
101 tggannnnnnnagctgctcattaaagtattcaatgagagtgttgtaagctatcaaacatccaaattcatcatagtcttctttcttctgactaatcttttt 200  Q
    | ||       || || |||||  |||||||   || ||  |||||||||||||  || |||| ||||||||||||||||||||||  |||||||   ||    
25671470 tagaatttttaagttgttcattgtagtattcggcgaaagcattgtaagctatcaggcacccaagttcatcatagtcttctttcttcgtactaatcaaatt 25671371  T
201 tgacaatatgtcagtattacaccccattggaaagttccctggaaccactagctccaccgctccttctt 268  Q
    || ||| |   ||| ||||||||| ||||||||||| || |||| |||||||||||| ||||||||||    
25671370 tgtcaacacaccagcattacacccaattggaaagtttccaggaatcactagctccacggctccttctt 25671303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 268
Target Start/End: Complemental strand, 25677975 - 25677708
Alignment:
1 acaccatactgttgtggtgtttgatataaacgcttggcatcgttgtagtaatcaaaatatactatcttagcttgagggtgtttctgttttattgtctcta 100  Q
    |||||||| || |||||||||||||||||||| |||  || ||||||||| |||||||||| ||||||||||||||||| ||| ||| ||| ||||||||    
25677975 acaccatattgctgtggtgtttgatataaacgtttgagattgttgtagtagtcaaaatatattatcttagcttgagggtatttatgtcttaatgtctcta 25677876  T
101 tggannnnnnnagctgctcattaaagtattcaatgagagtgttgtaagctatcaaacatccaaattcatcatagtcttctttcttctgactaatcttttt 200  Q
    | ||       || || |||||  |||||||   || ||  |||||||||||||  || |||| ||||||||||||||||||||||  |||||||   ||    
25677875 tagaatttttaagttgttcattgtagtattcggcgaaagcattgtaagctatcaggcacccaagttcatcatagtcttctttcttcgtactaatcaaatt 25677776  T
201 tgacaatatgtcagtattacaccccattggaaagttccctggaaccactagctccaccgctccttctt 268  Q
    || ||| |   ||| ||||||||| ||||||||||| || |||| |||||||||||| ||||||||||    
25677775 tgtcaacacaccagcattacacccaattggaaagtttccaggaatcactagctccacggctccttctt 25677708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 268
Target Start/End: Complemental strand, 25684651 - 25684384
Alignment:
1 acaccatactgttgtggtgtttgatataaacgcttggcatcgttgtagtaatcaaaatatactatcttagcttgagggtgtttctgttttattgtctcta 100  Q
    |||||||| || |||||||||||||||||||| |||  || ||||||||| |||||||||| ||||||||||||||||| ||| ||| ||| ||||||||    
25684651 acaccatattgctgtggtgtttgatataaacgtttgagattgttgtagtagtcaaaatatattatcttagcttgagggtatttatgtcttaatgtctcta 25684552  T
101 tggannnnnnnagctgctcattaaagtattcaatgagagtgttgtaagctatcaaacatccaaattcatcatagtcttctttcttctgactaatcttttt 200  Q
    | ||       || || |||||  |||||||   || ||  |||||||||||||  || |||| ||||||||||||||||||||||  |||||||   ||    
25684551 tagaatttttaagttgttcattgtagtattcggcgaaagcattgtaagctatcaggcacccaagttcatcatagtcttctttcttcgtactaatcaaatt 25684452  T
201 tgacaatatgtcagtattacaccccattggaaagttccctggaaccactagctccaccgctccttctt 268  Q
    || ||| |   ||| ||||||||| ||||||||||| || |||| |||||||||||| ||||||||||    
25684451 tgtcaacacaccagcattacacccaattggaaagtttccaggaatcactagctccacggctccttctt 25684384  T

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Target: scaffold0029 (Bit Score: 59; Significance: 5e-25; HSPs: 2)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 2 - 185
Target Start/End: Original strand, 18364 - 18547
Alignment:
2 caccatactgttgtggtgtttgatataaacgcttggcatcgttgtagtaatcaaaatatactatcttagcttgagggtgtttctgttttattgtctctat 101  Q
    ||||||| ||||| ||||||||||||||||| |||||||| || ||||| ||||| |||| ||||||| ||| |||||| |||||| ||| |||||||||    
18364 caccatattgttgcggtgtttgatataaacgtttggcatcattatagtagtcaaagtatattatcttaacttcagggtgcttctgtcttagtgtctctat 18463  T
102 ggannnnnnnagctgctcattaaagtattcaatgagagtgttgtaagctatcaaacatccaaattcatcatagtcttctttctt 185  Q
     ||       || ||| | |||||||| || || | | | ||||||||||| || || ||||||||||||||||||||||||||    
18464 agaattttttagttgcccgttaaagtactctattaaattattgtaagctattaagcacccaaattcatcatagtcttctttctt 18547  T

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Target: scaffold0029; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 2 - 185
Target Start/End: Original strand, 43376 - 43559
Alignment:
2 caccatactgttgtggtgtttgatataaacgcttggcatcgttgtagtaatcaaaatatactatcttagcttgagggtgtttctgttttattgtctctat 101  Q
    ||||||| ||||| ||||||||||||||||  |||||||| || ||||| ||||| |||| ||||||| ||| |||||| |||||| ||| |||||||||    
43376 caccatattgttgcggtgtttgatataaacatttggcatcattatagtagtcaaagtatattatcttaacttcagggtgcttctgtcttagtgtctctat 43475  T
102 ggannnnnnnagctgctcattaaagtattcaatgagagtgttgtaagctatcaaacatccaaattcatcatagtcttctttctt 185  Q
     ||       || ||| | |||||||| || || | | | ||||||||||| || || ||||||||||||||||||||||||||    
43476 agaattttttagttgcccgttaaagtactctattaaattattgtaagctattaagcacccaaattcatcatagtcttctttctt 43559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 59; Significance: 5e-25; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 2 - 185
Target Start/End: Original strand, 33120609 - 33120792
Alignment:
2 caccatactgttgtggtgtttgatataaacgcttggcatcgttgtagtaatcaaaatatactatcttagcttgagggtgtttctgttttattgtctctat 101  Q
    ||||||| ||||| ||||||||||||||||| |||||||| || ||||| ||||| |||| ||||||| ||| |||||| |||||| ||| |||||||||    
33120609 caccatattgttgcggtgtttgatataaacgtttggcatcattatagtagtcaaagtatattatcttaacttcagggtgcttctgtcttagtgtctctat 33120708  T
102 ggannnnnnnagctgctcattaaagtattcaatgagagtgttgtaagctatcaaacatccaaattcatcatagtcttctttctt 185  Q
     ||       || ||| |||||||||| || |  | | | ||||||||||| || || ||||||||||||||||||||||||||    
33120709 agaattttttagttgcccattaaagtactcgactaaattattgtaagctattaagcacccaaattcatcatagtcttctttctt 33120792  T

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Target: chr2; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 2 - 185
Target Start/End: Original strand, 33130352 - 33130535
Alignment:
2 caccatactgttgtggtgtttgatataaacgcttggcatcgttgtagtaatcaaaatatactatcttagcttgagggtgtttctgttttattgtctctat 101  Q
    ||||||| ||||| ||||||||||||||||| |||||||| || ||||| ||||| |||| ||||||| ||| |||||| |||||| ||| |||||||||    
33130352 caccatattgttgcggtgtttgatataaacgtttggcatcattatagtagtcaaagtatattatcttaacttcagggtgcttctgtcttagtgtctctat 33130451  T
102 ggannnnnnnagctgctcattaaagtattcaatgagagtgttgtaagctatcaaacatccaaattcatcatagtcttctttctt 185  Q
     ||       || ||| |||||||||| || |  | | | ||||||||||| || || ||||||||||||||||||||||||||    
33130452 agaattttttagttgcccattaaagtactcgactaaattattgtaagctattaagcacccaaattcatcatagtcttctttctt 33130535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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