View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18272_low_22 (Length: 302)
Name: NF18272_low_22
Description: NF18272
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18272_low_22 |
 | |
|
| [»] chr1 (1 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 1 - 302
Target Start/End: Original strand, 42163333 - 42163634
Alignment:
| Q |
1 |
tgatgaagtattcattctcctcaatatccacaccctagcaaaaacacaattactaattatgcctatgaatatgtatctaatgaaagtatatcgctatttt |
100 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42163333 |
tgatgaagtattcattatcctcaatatccacaccctagcaaaaacacaattactaattatgcctatgaatatgtatctaatgaaagtatatcgctatttt |
42163432 |
T |
|
| Q |
101 |
gcagtattataatacggatagaaacaagcataatatgaactgaactacgcattagtcattacacattcaaaaaccaaaatgactattattccaaagaaag |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||| |||||||| ||||||||||||||||||| |
|
|
| T |
42163433 |
gcagtattataatacggatagaaacaagcataatatgaattgaactactcattagtcattacacattcaaagaccaaaataactattattccaaagaaag |
42163532 |
T |
|
| Q |
201 |
tatgcatttatatatctaatcgttggtataatctatatgtacctggtccctcgcaaattcttctgccccaaagaagcctaggtatgaatgaggggacttt |
300 |
Q |
| |
|
|||||||||||| ||||||| ||| ||||||| |||| | |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
42163533 |
tatgcatttatacatctaattgtttgtataatttatacgaacctggtccctcgcaaattcttctgccccagagaagcctaggtatgaatgaggggacttt |
42163632 |
T |
|
| Q |
301 |
tc |
302 |
Q |
| |
|
|| |
|
|
| T |
42163633 |
tc |
42163634 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 151 - 188
Target Start/End: Original strand, 26675338 - 26675375
Alignment:
| Q |
151 |
attagtcattacacattcaaaaaccaaaatgactatta |
188 |
Q |
| |
|
|||||||||||||||||||| ||||||| ||||||||| |
|
|
| T |
26675338 |
attagtcattacacattcaagaaccaaagtgactatta |
26675375 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 151 - 188
Target Start/End: Original strand, 26946946 - 26946983
Alignment:
| Q |
151 |
attagtcattacacattcaaaaaccaaaatgactatta |
188 |
Q |
| |
|
|||||||||||||||||||| ||||||| ||||||||| |
|
|
| T |
26946946 |
attagtcattacacattcaagaaccaaagtgactatta |
26946983 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 159 - 187
Target Start/End: Original strand, 29714761 - 29714789
Alignment:
| Q |
159 |
ttacacattcaaaaaccaaaatgactatt |
187 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
29714761 |
ttacacattcaaaaaccaaaatgactatt |
29714789 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University