View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18272_low_24 (Length: 289)

Name: NF18272_low_24
Description: NF18272
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18272_low_24
NF18272_low_24
[»] chr4 (1 HSPs)
chr4 (1-289)||(26368636-26368924)


Alignment Details
Target: chr4 (Bit Score: 281; Significance: 1e-157; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 1 - 289
Target Start/End: Original strand, 26368636 - 26368924
Alignment:
Q  1 aatcaacaatctcatccaactccccgtcactccgcagcaaaacattatctccactctttaacattgcatccccaataaactctcccttaacgagcaccga 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26368636 aatcaacaatctcatccaactccccgtcactccgcagcaaaacattatctccactctttaacattgcatccccaataaactctcccttaacgagcaccga 26368735  T
Q  101 cttcaaccactcaacacggttccttatagactcaagcttccctcttgacatcaaaatgagcttagctatctgaggatacgatagagaattatgcttcaac 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26368736 cttcaaccactcaacacggttccttatagactcaagcttccctcttgacatcaaaatgagcttagctatctgaggatacgatagagaattatgcttcaac 26368835  T
Q  201 catctagagaattgaagaaatccacaatcaaaatacaaaaacttcaaaaaactatcaataatatgcaaacatgggttgcctgctatcaa 289  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||    
T  26368836 catctagagaattgaagaaatccacaatcaaaatacaaaaacttcaaaaaactatcaacaatacgcaaacatgggttgcctgctatcaa 26368924  T

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