View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18272_low_26 (Length: 271)
Name: NF18272_low_26
Description: NF18272
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18272_low_26 |
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Alignment Details
Target: chr1 (Bit Score: 140; Significance: 2e-73; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 81 - 249
Target Start/End: Complemental strand, 5127331 - 5127163
Alignment:
| Q |
81 |
agtatattgacatatcttgtagatgtagacgagttgctgaaatcaacatttccaaaacctgccataatatgaatttcctcttctacacttgtatgaataa |
180 |
Q |
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| T |
5127331 |
agtatattgacatatcttgtagatgtagacgagttgctgaaatcaacatttccaaaacctgccataatatgaatttcctcttctacacttgtatgaataa |
5127232 |
T |
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| Q |
181 |
gacatgaagnnnnnnngactggtgtgagcttgttgacaaattatagttctgaggttgagttgaacggcg |
249 |
Q |
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| T |
5127231 |
gatatgaagtttttttgactggtgtgagcttgctgacaaattatagttctgaggttgagttgaacggcg |
5127163 |
T |
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Target: chr1; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 11 - 95
Target Start/End: Complemental strand, 5127432 - 5127348
Alignment:
| Q |
11 |
caaagggaaagaggatgaagatgtgattgacacttgaaaacaaagttgaagttaaggagaacaagattgcagtatattgacatat |
95 |
Q |
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| T |
5127432 |
caaaaggaaagaggatgaagatgtgattgacacttgaaaacaatgttgaagttaaggagaataagattgcagtatattgacatat |
5127348 |
T |
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