View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18272_low_27 (Length: 258)
Name: NF18272_low_27
Description: NF18272
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18272_low_27 |
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Alignment Details
Target: chr1 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 17 - 249
Target Start/End: Complemental strand, 1113433 - 1113200
Alignment:
| Q |
17 |
caactattcccatatattttgtgagtcttgataagagttgactcctcttctttggtccatggagnnnnnnn-atatctggatttaaatgattataccacc |
115 |
Q |
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| T |
1113433 |
caactattcccatatattttgtgagtcttgataagagttgactcctcttctttggtccatggagttttttttatatctggatttaaatgattataccacc |
1113334 |
T |
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| Q |
116 |
taaaagaaaaacaaaagtttcacttccaattttcaaagaaaaacatcctcaaaccactaaatgcaaatatcagtgtaagataagaattatgatggaatat |
215 |
Q |
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||||||||||||||| |||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||| |||||| |
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| T |
1113333 |
taaaagaaaaacaaatgttttacttccaattttcaaagaaaaacatccttaaaccactaaatgcaaatatcagtgtaagataagaattgtgattgaatat |
1113234 |
T |
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| Q |
216 |
aacatttacctttctctacattgtttacctatgc |
249 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
1113233 |
aacatttacctttctctacattgtttacctatgc |
1113200 |
T |
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