View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18272_low_29 (Length: 250)

Name: NF18272_low_29
Description: NF18272
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18272_low_29
NF18272_low_29
[»] chr1 (6 HSPs)
chr1 (1-109)||(36225022-36225138)
chr1 (168-239)||(36224934-36225005)
chr1 (153-232)||(1541851-1541934)
chr1 (153-232)||(17771899-17771982)
chr1 (153-232)||(1533872-1533955)
chr1 (153-232)||(17752082-17752165)
[»] chr7 (4 HSPs)
chr7 (153-232)||(32256635-32256718)
chr7 (153-232)||(40907621-40907704)
chr7 (153-232)||(32257547-32257630)
chr7 (153-232)||(40906785-40906868)
[»] scaffold0248 (1 HSPs)
scaffold0248 (153-232)||(15502-15585)
[»] scaffold0041 (2 HSPs)
scaffold0041 (153-232)||(65390-65473)
scaffold0041 (153-232)||(43150-43233)
[»] chr8 (6 HSPs)
chr8 (153-232)||(8205612-8205695)
chr8 (153-232)||(38082998-38083081)
chr8 (153-232)||(22974236-22974319)
chr8 (153-225)||(22973268-22973344)
chr8 (178-232)||(8204034-8204088)
chr8 (153-232)||(38083810-38083893)
[»] chr3 (3 HSPs)
chr3 (153-232)||(46042815-46042898)
chr3 (153-232)||(46044260-46044343)
chr3 (153-232)||(11537092-11537175)
[»] chr2 (2 HSPs)
chr2 (153-232)||(13432837-13432920)
chr2 (153-232)||(13434502-13434585)
[»] scaffold0007 (1 HSPs)
scaffold0007 (153-228)||(278387-278466)
[»] chr5 (2 HSPs)
chr5 (153-228)||(19878155-19878234)
chr5 (153-228)||(19879905-19879984)


Alignment Details
Target: chr1 (Bit Score: 84; Significance: 5e-40; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 1 - 109
Target Start/End: Complemental strand, 36225138 - 36225022
Alignment:
Q  1 ttttgatttgtgtttatggttattcgtattggtgagacttaggctacctttacaaacacaaggacaattcgcccatatttaa--------atttatagat 92  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||        ||||||||||    
T  36225138 ttttgatttgtgtttatggttattcgtattggtgagacttaggctacctttacaaacacaaggacaattcgtccatatttaaatttttaaatttatagat 36225039  T
Q  93 tgaaactctccttcctt 109  Q
    |||||||||||||||||    
T  36225038 tgaaactctccttcctt 36225022  T

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Target: chr1; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 168 - 239
Target Start/End: Complemental strand, 36225005 - 36224934
Alignment:
Q  168 attcatcctctttactctccttttataccctttcttccctctcatctttgggaaaaatgccctaattttcat 239  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  36225005 attcatcctctttactctccttttataccctttcttccctcttatctttgggaaaaatgccctaattttcat 36224934  T

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Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 153 - 232
Target Start/End: Complemental strand, 1541934 - 1541851
Alignment:
Q  153 attcatcaacatcaaattcatcc----tctttactctccttttataccctttcttccctctcatctttgggaaaaatgccctaa 232  Q
    |||||||||||||||||||||||    | ||||||||||  | ||||| ||||||| |||||||||||||| ||||||||||||    
T  1541934 attcatcaacatcaaattcatccatcctatttactctccactcataccgtttcttctctctcatctttggggaaaatgccctaa 1541851  T

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Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 153 - 232
Target Start/End: Complemental strand, 17771982 - 17771899
Alignment:
Q  153 attcatcaacatcaaattcatcc----tctttactctccttttataccctttcttccctctcatctttgggaaaaatgccctaa 232  Q
    |||||||||||||||||||||||    | ||||||||||  | ||||| ||||||| |||||||||||||| ||||||||||||    
T  17771982 attcatcaacatcaaattcatccatcctatttactctccactcataccgtttcttctctctcatctttggggaaaatgccctaa 17771899  T

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Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 153 - 232
Target Start/End: Original strand, 1533872 - 1533955
Alignment:
Q  153 attcatcaacatcaaattcatcc----tctttactctccttttataccctttcttccctctcatctttgggaaaaatgccctaa 232  Q
    |||||||||||||||||||||||    | ||||||||||  | ||||| ||| ||| |||||||||||||| ||||||||||||    
T  1533872 attcatcaacatcaaattcatccatcgtatttactctccactcataccgtttgttctctctcatctttggggaaaatgccctaa 1533955  T

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Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 153 - 232
Target Start/End: Original strand, 17752082 - 17752165
Alignment:
Q  153 attcatcaacatcaaattcatcc----tctttactctccttttataccctttcttccctctcatctttgggaaaaatgccctaa 232  Q
    |||||||||||||||||||||||    | ||||||||||  | ||||| ||| ||| |||||||||||||| ||||||||||||    
T  17752082 attcatcaacatcaaattcatccatcgtatttactctccactcataccgtttgttctctctcatctttggggaaaatgccctaa 17752165  T

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Target: chr7 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 153 - 232
Target Start/End: Original strand, 32256635 - 32256718
Alignment:
Q  153 attcatcaacatcaaattcatcc----tctttactctccttttataccctttcttccctctcatctttgggaaaaatgccctaa 232  Q
    |||||||||||||||||||||||    | ||||||||||  | ||||| ||||||| |||||||||||||||||||||||||||    
T  32256635 attcatcaacatcaaattcatccatcgtatttactctccactcataccgtttcttctctctcatctttgggaaaaatgccctaa 32256718  T

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Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 153 - 232
Target Start/End: Complemental strand, 40907704 - 40907621
Alignment:
Q  153 attcatcaacatcaaattcatcc----tctttactctccttttataccctttcttccctctcatctttgggaaaaatgccctaa 232  Q
    |||||||||||||||||||||||    | ||||||||||  | ||||| ||||||| |||||||||||||| ||||||||||||    
T  40907704 attcatcaacatcaaattcatccatcgtatttactctccactcataccatttcttctctctcatctttggggaaaatgccctaa 40907621  T

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Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 153 - 232
Target Start/End: Complemental strand, 32257630 - 32257547
Alignment:
Q  153 attcatcaacatcaaattcatcc----tctttactctccttttataccctttcttccctctcatctttgggaaaaatgccctaa 232  Q
    |||||||||||||||||||||||    | ||||||||||  | ||||  ||||||| |||||||||||||| ||||||||||||    
T  32257630 attcatcaacatcaaattcatccatcgtatttactctccactcatactgtttcttctctctcatctttggggaaaatgccctaa 32257547  T

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Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 153 - 232
Target Start/End: Original strand, 40906785 - 40906868
Alignment:
Q  153 attcatcaacatcaaattcatcc----tctttactctccttttataccctttcttccctctcatctttgggaaaaatgccctaa 232  Q
    |||||||||||||||||||||||    | ||||||||||  | ||||  ||||||| |||||||||||||| ||||||||||||    
T  40906785 attcatcaacatcaaattcatccatcgtatttactctccactcatactgtttcttctctctcatctttggggaaaatgccctaa 40906868  T

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Target: scaffold0248 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0248
Description:

Target: scaffold0248; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 153 - 232
Target Start/End: Complemental strand, 15585 - 15502
Alignment:
Q  153 attcatcaacatcaaattcatcc----tctttactctccttttataccctttcttccctctcatctttgggaaaaatgccctaa 232  Q
    |||||||||||||||||||||||    | ||||||||||  | ||||| ||||||| |||||||||||||| ||||||||||||    
T  15585 attcatcaacatcaaattcatccatcgtatttactctccagtcataccgtttcttctctctcatctttggggaaaatgccctaa 15502  T

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Target: scaffold0041 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 153 - 232
Target Start/End: Original strand, 65390 - 65473
Alignment:
Q  153 attcatcaacatcaaattcatcc----tctttactctccttttataccctttcttccctctcatctttgggaaaaatgccctaa 232  Q
    |||||||||||||||||||||||    | ||||||||||  | ||||| ||||||| |||||||||||||| ||||||||||||    
T  65390 attcatcaacatcaaattcatccatcgtatttactctccactcataccatttcttctctctcatctttggggaaaatgccctaa 65473  T

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Target: scaffold0041; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 153 - 232
Target Start/End: Complemental strand, 43233 - 43150
Alignment:
Q  153 attcatcaacatcaaattcatcc----tctttactctccttttataccctttcttccctctcatctttgggaaaaatgccctaa 232  Q
    |||||||||||||||||||||||    | ||||||||||  | ||||  ||||||| |||||||||||||| ||||||||||||    
T  43233 attcatcaacatcaaattcatccatcgtatttactctccactcatactgtttcttctctctcatctttggggaaaatgccctaa 43150  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 153 - 232
Target Start/End: Complemental strand, 8205695 - 8205612
Alignment:
Q  153 attcatcaacatcaaattcatcc----tctttactctccttttataccctttcttccctctcatctttgggaaaaatgccctaa 232  Q
    |||||||||||||||||||||||    | |||||||| |  ||||||| ||||||| |||||||||||||| ||||||||||||    
T  8205695 attcatcaacatcaaattcatccatcgtatttactcttcacttataccgtttcttctctctcatctttggggaaaatgccctaa 8205612  T

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Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 153 - 232
Target Start/End: Original strand, 38082998 - 38083081
Alignment:
Q  153 attcatcaacatcaaattcatcc----tctttactctccttttataccctttcttccctctcatctttgggaaaaatgccctaa 232  Q
    |||||||||||||||||||||||    | ||||||||||  | ||||| ||||||| |||||||||||||| ||||||||||||    
T  38082998 attcatcaacatcaaattcatccatcgtatttactctccactcataccgtttcttctctctcatctttggggaaaatgccctaa 38083081  T

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Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 153 - 232
Target Start/End: Complemental strand, 22974319 - 22974236
Alignment:
Q  153 attcatcaacatcaaattcatcc----tctttactctccttttataccctttcttccctctcatctttgggaaaaatgccctaa 232  Q
    |||||||||||||||||||||||    | ||||||||||  | ||| | ||||||| |||||||||||||| ||||||||||||    
T  22974319 attcatcaacatcaaattcatccatggtatttactctccactcatatcgtttcttctctctcatctttggggaaaatgccctaa 22974236  T

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Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 153 - 225
Target Start/End: Original strand, 22973268 - 22973344
Alignment:
Q  153 attcatcaacatcaaattcatcc----tctttactctccttttataccctttcttccctctcatctttgggaaaaat 225  Q
    |||||||||||||||||||||||    | ||||||||||  | ||||| ||||||| |||||||||||||| |||||    
T  22973268 attcatcaacatcaaattcatccatcgtatttactctccactcataccgtttcttctctctcatctttggggaaaat 22973344  T

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Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 232
Target Start/End: Original strand, 8204034 - 8204088
Alignment:
Q  178 tttactctccttttataccctttcttccctctcatctttgggaaaaatgccctaa 232  Q
    ||||||||||  | ||||| ||||||| |||||||||||||| ||||||||||||    
T  8204034 tttactctccactcataccgtttcttctctctcatctttggggaaaatgccctaa 8204088  T

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Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 153 - 232
Target Start/End: Complemental strand, 38083893 - 38083810
Alignment:
Q  153 attcatcaacatcaaattcatcc----tctttactctccttttataccctttcttccctctcatctttgggaaaaatgccctaa 232  Q
    |||||||||||||||||||||||    | ||||||||||  | ||| | ||||||| |||||||||||||  ||||||||||||    
T  38083893 attcatcaacatcaaattcatccatcgtatttactctccactcatatcatttcttctctctcatctttggagaaaatgccctaa 38083810  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 153 - 232
Target Start/End: Original strand, 46042815 - 46042898
Alignment:
Q  153 attcatcaacatcaaattcatcc----tctttactctccttttataccctttcttccctctcatctttgggaaaaatgccctaa 232  Q
    |||||||||||||||||||||||    | ||||||||||  | ||||| ||||||| |||||||||||||| ||||||||||||    
T  46042815 attcatcaacatcaaattcatccatcgtatttactctccactcataccgtttcttctctctcatctttggggaaaatgccctaa 46042898  T

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Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 153 - 232
Target Start/End: Complemental strand, 46044343 - 46044260
Alignment:
Q  153 attcatcaacatcaaattcatcc----tctttactctccttttataccctttcttccctctcatctttgggaaaaatgccctaa 232  Q
    |||||||||||||||||||||||    | ||||||||||  | ||||| ||||||| |||||||||||||| ||||||||||||    
T  46044343 attcatcaacatcaaattcatccatcgtatttactctccactcataccgtttcttctctctcatctttggggaaaatgccctaa 46044260  T

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Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 153 - 232
Target Start/End: Original strand, 11537092 - 11537175
Alignment:
Q  153 attcatcaacatcaaattcatcc----tctttactctccttttataccctttcttccctctcatctttgggaaaaatgccctaa 232  Q
    ||||||||||||||||||||||     | ||||||||||  | ||||| ||||||| |||||||||||||| ||||||||||||    
T  11537092 attcatcaacatcaaattcatctatcgtatttactctccactcataccgtttcttctctctcatctttggggaaaatgccctaa 11537175  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 153 - 232
Target Start/End: Original strand, 13432837 - 13432920
Alignment:
Q  153 attcatcaacatcaaattcatcc----tctttactctccttttataccctttcttccctctcatctttgggaaaaatgccctaa 232  Q
    |||||||||||||||||||||||    | ||||||||||  | ||||| ||||||| |||||||||||||| ||||||||||||    
T  13432837 attcatcaacatcaaattcatccatcgtatttactctccactcataccgtttcttctctctcatctttggggaaaatgccctaa 13432920  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 153 - 232
Target Start/End: Complemental strand, 13434585 - 13434502
Alignment:
Q  153 attcatcaacatcaaattcatcc----tctttactctccttttataccctttcttccctctcatctttgggaaaaatgccctaa 232  Q
    |||||||||||||||||||||||    | ||||||||||  | ||||| ||| ||| || ||||||||||| ||||||||||||    
T  13434585 attcatcaacatcaaattcatccatcgtatttactctccactcataccgtttattctctttcatctttggggaaaatgccctaa 13434502  T

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Target: scaffold0007 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 153 - 228
Target Start/End: Original strand, 278387 - 278466
Alignment:
Q  153 attcatcaacatcaaattcatcc----tctttactctccttttataccctttcttccctctcatctttgggaaaaatgcc 228  Q
    |||||||||||||||||||||||    | ||||||||||  | ||||| ||||||| |||||||||||||| ||||||||    
T  278387 attcatcaacatcaaattcatccatcgtatttactctccactcataccgtttcttctctctcatctttggggaaaatgcc 278466  T

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Target: chr5 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 153 - 228
Target Start/End: Original strand, 19878155 - 19878234
Alignment:
Q  153 attcatcaacatcaaattcatcc----tctttactctccttttataccctttcttccctctcatctttgggaaaaatgcc 228  Q
    |||||||||||||||||||||||    | ||||||||||  | ||||| ||||||| |||||||||||||| ||||||||    
T  19878155 attcatcaacatcaaattcatccatcgtatttactctccactcataccgtttcttctctctcatctttggggaaaatgcc 19878234  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 153 - 228
Target Start/End: Complemental strand, 19879984 - 19879905
Alignment:
Q  153 attcatcaacatcaaattcatcc----tctttactctccttttataccctttcttccctctcatctttgggaaaaatgcc 228  Q
    |||||||||||||||||||||||    | ||||||||||  | ||||| ||||||| |||||||||||||| ||||||||    
T  19879984 attcatcaacatcaaattcatccatcgtatttactctccactcataccgtttcttctctctcatctttggggaaaatgcc 19879905  T

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